View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17080_high_12 (Length: 454)
Name: NF17080_high_12
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_12 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 27969231 - 27968833
Alignment:
| Q |
15 |
caaaggttaaaaagatattttttcttccatgaagtgaatcgatatgtattgtcagtttagatggaattgccctttccgtcaatctgactgacatattata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27969231 |
caaaggttaaaaagatattttttcttccatgaagtgaatcgatatgtattgtcagtttagatggaattgccctttccgtcaatctgactgacatattata |
27969132 |
T |
|
| Q |
115 |
nnnnnnnacccattgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27969131 |
tttttttacccattgacattcacccaggaaaaacaatggttgttagaaaaatagcttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaat |
27969032 |
T |
|
| Q |
215 |
tgaatctgttatcaattatttaccaccacaaacaattatggatttcaattaataagcctagtatacattcaaaaccactacaattcaaaggtcaaacaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27969031 |
tgaatctgttatcaattatttaccaccacaaacaattatggatttcaattaataagcctagtatacattcaaaaccactacaattcaaaggtcaaacaaa |
27968932 |
T |
|
| Q |
315 |
tcaacaattttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcagcgcaggagctctttagaacgaaggac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27968931 |
tcaacaattttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcataattgaatggagtttgcagcgcaggagctctttagaacgaaggac |
27968833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 27 - 413
Target Start/End: Complemental strand, 27980814 - 27980423
Alignment:
| Q |
27 |
agatattttttcttccatgaagtgaatcgatatgtattgtcagtttagatggaattgccctttccgtcaatctgactgacat-attatannnnnnnaccc |
125 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||| |||||| | || |
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|
| T |
27980814 |
agatattttttcttccatggagtgaatcgatatgtattgccaatttagatgaaattgccctttccgtcaatctgacatacattattatatctttttatcc |
27980715 |
T |
|
| Q |
126 |
attgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaatctgtta |
225 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| |
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|
| T |
27980714 |
attgacattcacctaggaaaaacaatggttgttagaaaactagcttgtggggacgaaaccaaatggtgaatgagaaagtgtagaaaaattgaatctctta |
27980615 |
T |
|
| Q |
226 |
tcaattatttaccaccac-aaacaattatggatttcaattaataagcctagtatacattcaaaaccactacaa---ttcaaaggtcaaacaaatcaacaa |
321 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |
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|
| T |
27980614 |
tcaattatttaccaccaccaaacaattatggatttcaattaataagcctagtatacattcaaaaccgctacaaagtttcaaaggtcaaacaaagcaacac |
27980515 |
T |
|
| Q |
322 |
ttttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcagcgcaggagctctttagaacgaaggac |
413 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27980514 |
ttttaaaagtttaagtcttcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcagcgcaggagctctttagaacgaaggac |
27980423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 27 - 413
Target Start/End: Complemental strand, 28038116 - 28037725
Alignment:
| Q |
27 |
agatattttttcttccatgaagtgaatcgatatgtattgtcagtttagatggaattgccctttccgtcaatctgactgacat-attatannnnnnnaccc |
125 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||| |||||| | || |
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|
| T |
28038116 |
agatattttttcttccatggagtgaatcgatatgtattgccaatttagatgaaattgccctttccgtcaatctgacatacattattatatctttttatcc |
28038017 |
T |
|
| Q |
126 |
attgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaatctgtta |
225 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| |
|
|
| T |
28038016 |
attgacattcacctaggaaaaacaatggttgttagaaaactagcttgtggggacgaaaccaaatggtgaatgagaaagtgtagaaaaattgaatctctta |
28037917 |
T |
|
| Q |
226 |
tcaattatttaccaccac-aaacaattatggatttcaattaataagcctagtatacattcaaaaccactacaa---ttcaaaggtcaaacaaatcaacaa |
321 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
28037916 |
tcaattatttaccaccaccaaacaattatggatttcaattaataagcctagtatacattcaaaaccgctacaaagtttcaaaggtcaaacaaagcaacac |
28037817 |
T |
|
| Q |
322 |
ttttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcagcgcaggagctctttagaacgaaggac |
413 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28037816 |
ttttaaaagtttaagtcttcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcagcgcaggagctctttagaacgaaggac |
28037725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 27887240 - 27886906
Alignment:
| Q |
19 |
ggttaaaaagatattttttcttccatgaagtgaatcgatatgtattgtcagtttagatggaattgccctttccgtcaatctgactgacatattatannnn |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27887240 |
ggttaaaaatatattttttcttccatgaagtgaatcaatatgtattgtcaatttagatggaattgccatttccgtcaatctgactgacatattataattt |
27887141 |
T |
|
| Q |
119 |
nnnacccattgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27887140 |
tttacccattgacattcacccaggaaaaacaatggttgttaaaaaaataacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaa |
27887041 |
T |
|
| Q |
219 |
tctgttatcaattattt---accaccacaaacaattatggatttcaattaataagcctagtatacattcaaaaccactacaa---ttcaaaggtcaaaca |
312 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27887040 |
tctgttatcaattatttaccaccaccacaaacaattgtggatttcaattaataagcctagtatacattcaaaaccactacaaagtttcaaaggtcaaaca |
27886941 |
T |
|
| Q |
313 |
aatcaacaattttaaaagtttaagtctgcaagaga |
347 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| |
|
|
| T |
27886940 |
aatcaacacttttaaaagtttaagtcttcaagaga |
27886906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 27945898 - 27945564
Alignment:
| Q |
19 |
ggttaaaaagatattttttcttccatgaagtgaatcgatatgtattgtcagtttagatggaattgccctttccgtcaatctgactgacatattatannnn |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27945898 |
ggttaaaaatatattttttcttccatgaagtgaatcaatatgtattgtcaatttagatggaattgccatttccgtcaatctgactgacatattataattt |
27945799 |
T |
|
| Q |
119 |
nnnacccattgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27945798 |
tttacccattgacattcacccaggaaaaacaatggttgttaaaaaaataacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaa |
27945699 |
T |
|
| Q |
219 |
tctgttatcaattattt---accaccacaaacaattatggatttcaattaataagcctagtatacattcaaaaccactacaa---ttcaaaggtcaaaca |
312 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27945698 |
tctgttatcaattatttaccaccaccacaaacaattgtggatttcaattaataagcctagtatacattcaaaaccactacaaagtttcaaaggtcaaaca |
27945599 |
T |
|
| Q |
313 |
aatcaacaattttaaaagtttaagtctgcaagaga |
347 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| |
|
|
| T |
27945598 |
aatcaacacttttaaaagtttaagtcttcaagaga |
27945564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 28026141 - 28025807
Alignment:
| Q |
19 |
ggttaaaaagatattttttcttccatgaagtgaatcgatatgtattgtcagtttagatggaattgccctttccgtcaatctgactgacatattatannnn |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28026141 |
ggttaaaaatatattttttcttccatgaagtgaatcaatatgtattgtcaatttagatggaattgccatttccgtcaatctgactgacatattataattt |
28026042 |
T |
|
| Q |
119 |
nnnacccattgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28026041 |
tttacccattgacattcacccaggaaaaacaatggttgttaaaaaaataacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaa |
28025942 |
T |
|
| Q |
219 |
tctgttatcaattattt---accaccacaaacaattatggatttcaattaataagcctagtatacattcaaaaccactacaa---ttcaaaggtcaaaca |
312 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28025941 |
tctgttatcaattatttaccaccaccacaaacaattgtggatttcaattaataagcctagtatacattcaaaaccactacaaagtttcaaaggtcaaaca |
28025842 |
T |
|
| Q |
313 |
aatcaacaattttaaaagtttaagtctgcaagaga |
347 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| |
|
|
| T |
28025841 |
aatcaacacttttaaaagtttaagtcttcaagaga |
28025807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 16895666 - 16895583
Alignment:
| Q |
304 |
ggtcaaacaaatcaacaattttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcag |
387 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
16895666 |
ggtcaaagaaataaaccattttaaaagtttaagttatcaagagaaagaagatgtggggtaatcatgattgaatggagtttgcag |
16895583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 27873631 - 27873584
Alignment:
| Q |
372 |
tgaatggagtttgcagcgcaggagctctttagaacgaaggacgaagga |
419 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
27873631 |
tgaatggagtttgcaccgtaggagctctttagaacgaaggaccaagga |
27873584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 54431211 - 54431151
Alignment:
| Q |
359 |
gggtaatcatgattgaatggagtttgcagcgcaggagctctttagaacgaaggacgaagga |
419 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
54431211 |
gggtaaccatgattgaatggagtttgcagtgcaggagctctttagaacgaaggaccaagga |
54431151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 54431384 - 54431294
Alignment:
| Q |
68 |
agtttagatggaattgccctttccgtcaatctgactgaca-tattatannnnnnnacccattgacattcacccaggaaaaacaatggttgtt |
158 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54431384 |
agtttagatggaattgccctttttatcaatctgacagacagtattctatttttt-acccattgacattcacccaggaaaaacaatggttgtt |
54431294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 387
Target Start/End: Complemental strand, 52401446 - 52401416
Alignment:
| Q |
357 |
tggggtaatcatgattgaatggagtttgcag |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
52401446 |
tggggtaatcatgattgaatggagtttgcag |
52401416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 15809360 - 15809443
Alignment:
| Q |
304 |
ggtcaaacaaatcaacaattttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcag |
387 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
15809360 |
ggtcaaagaaataaaccattttaaaagtttaagttatcaagagaaagaagatgtggggtaatcatgattgaatggagtttgcag |
15809443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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