View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_2 (Length: 746)
Name: NF17080_high_2
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 325 - 526
Target Start/End: Original strand, 38367473 - 38367674
Alignment:
| Q |
325 |
aaaggcaaagatcgttaaagtgtatagtaaactggatccagtactccgtacaccttgaggtttgagccatcacaaatctgttgcacatgatttatcaatt |
424 |
Q |
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| T |
38367473 |
aaaggcaaagatcgttaaagtgtatagtaaactgaatccagtactccgtacaccttgaggtttgagccatcacaaatctgttgcacatgatttatcaatt |
38367572 |
T |
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| Q |
425 |
catgtggtacaatcatatacgtgtgtggggatcatttcttgtcagattggtgagagaaaaattctagggcaaaattattatactaatgcaaattgttgat |
524 |
Q |
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| T |
38367573 |
catgtggtacaatcatatacgtgtgtggggatcatttcttgtcagattggtgagagaaaaattctagggcaaaattattatactaatgcaaattgttgat |
38367672 |
T |
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| Q |
525 |
ag |
526 |
Q |
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| T |
38367673 |
ag |
38367674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 38367147 - 38367428
Alignment:
| Q |
16 |
aatatcttcggtataaatttgaggnnnnnnntagaggaggggcaactaaattgcaaatgaggaaattaaagagtgaaaatagagtggttaaaaagtgtac |
115 |
Q |
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| T |
38367147 |
aatatcttcggcataaatttgaggaaaaaaatagaggaggggcaactaaattgcaaaggaggaaattaaagagtgaaaatagagtggttaaaaagtgtac |
38367246 |
T |
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| Q |
116 |
ttaaatcccccaagtaggttaac-nnnnnnnnnnnnnnnnnnnngtgaatttaa----gtcaaaacaaaaccatgcatgcatgtttctcttttctctaca |
210 |
Q |
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| T |
38367247 |
ttaaatcccccaagtaggttaacaaaaaaaagaaaagaaaaaaagtgaatttaattaagtcaaaacaaaac----catgcatgtttctcttttctctaca |
38367342 |
T |
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| Q |
211 |
ttcactgtactcccaagatctgataatcaattttagtaaacttcaggatctttagtttatgcttcaaaataattaaattaaacaaa |
296 |
Q |
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| T |
38367343 |
ttcactgtactcccaagatctgataatcaattttagtaaacttcaggatctttagtttatgcttcaaaataattaaattaaacaaa |
38367428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 598 - 731
Target Start/End: Original strand, 38367693 - 38367837
Alignment:
| Q |
598 |
gttggatttggaattgagtattaatcatgtttaataatttcaaattctgcaatat-----------aaataaaacaaaggaaaacagtgaggaatcaaat |
686 |
Q |
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| T |
38367693 |
gttggatttggaattgagtattaatcatgtttaataatttaaaattctgcaatataaattatatataaataaaacaaagaaaaacagcgaggaatcaaat |
38367792 |
T |
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| Q |
687 |
ttaaatgcaaattggagaatattgatcatgaaggcatagcagctt |
731 |
Q |
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| T |
38367793 |
ttaaatgcaaattggagaatattgatcatgaaggcatagcagctt |
38367837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 598 - 718
Target Start/End: Complemental strand, 44523903 - 44523774
Alignment:
| Q |
598 |
gttggatttggaattgagtattaatcatgtttaataatttcaaattctgcaatat-----------aaataaaacaaaggaaaacagtgaggaatcaaat |
686 |
Q |
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| T |
44523903 |
gttggatttggaattgagta---atcatgtttaataatttaaaattctgcaatataaattatatgaaaataaaacaaagaaaaatagtgaggaatcaaag |
44523807 |
T |
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| Q |
687 |
ttaaatgcaaattggagaata-ttgatcatgaa |
718 |
Q |
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|||| ||||| |||||||||| ||||||||||| |
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| T |
44523806 |
ttaactgcaatttggagaatatttgatcatgaa |
44523774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 653 - 722
Target Start/End: Original strand, 5750678 - 5750747
Alignment:
| Q |
653 |
aaataaaacaaaggaaaacagtgaggaatcaaatttaaatgcaaattggagaatattgatcatgaaggca |
722 |
Q |
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||||||||||||| |||| |||||||||||||| |||| |||| ||||||||||||||||||||||||| |
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| T |
5750678 |
aaataaaacaaagaaaaatagtgaggaatcaaagttaaccgcaatttggagaatattgatcatgaaggca |
5750747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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