View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_20 (Length: 413)
Name: NF17080_high_20
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_20 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 79 - 413
Target Start/End: Original strand, 5032542 - 5032876
Alignment:
| Q |
79 |
aaagccccagtggcgaaaaccttgattttgcggccacaatcgcggttatagaccacaatttaaaagcttctgcggaccaatataaatcttatgtaacttt |
178 |
Q |
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| T |
5032542 |
aaagccccagtggcgaaaaccttgattttgcggccacaatcacggttatagaccacaatttaaaagcttctgcagaccaatatacatcttatgtaacttt |
5032641 |
T |
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| Q |
179 |
tgatcatggcaaggttttcatttataaacagtcttgaactatatgaaatatatgcgccgtttgtgggggaagatacaacaacgaggtcgaggttataaac |
278 |
Q |
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| T |
5032642 |
tgatcatggcaaggttttcatttataaacagtcttgaactatatgaaatatatgcgccgtttgtgggggaagatacaacaacgaggtcgaggttataaac |
5032741 |
T |
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| Q |
279 |
tatgggcactaacacatgcattggacatgatactcatttagaaaccaataataatttcagaaaatgaaaatgatagaatgtaactatatgtgtcgatgtc |
378 |
Q |
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| T |
5032742 |
tctgggcactaacacatgcattggacatgatactcatgtagaaaccaataataatttcagaaaatgaaaatgatagaatgtaactatatgtgtcgatgtc |
5032841 |
T |
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| Q |
379 |
ggtatcatgacaacaaaatgggagagtctgttttg |
413 |
Q |
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| T |
5032842 |
ggtatcatgacaacaaaatggaagagtctgttttg |
5032876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 79 - 265
Target Start/End: Original strand, 5037737 - 5037921
Alignment:
| Q |
79 |
aaagccccagtggcgaaaaccttgattttgcggccacaatcgcggttatagaccacaatttaaaagcttctgcggaccaatataaatcttatgtaacttt |
178 |
Q |
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| T |
5037737 |
aaagccccagagacaaaaacctttactttgcggacacaatcgtggttatagatgacaatttaaatgcctctgaagaccaatata--tctcatgtaacttt |
5037834 |
T |
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| Q |
179 |
tgatcatggcaaggttttcatttataaacagtcttgaactatatgaaatatatgcgccgtttgtgggggaagatacaacaacgaggt |
265 |
Q |
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| T |
5037835 |
tggtcatggtaaagttttcatttataaacaatcttggactatttgaaatatatgtgccgtttttgggggaagatacaacaaagaggt |
5037921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 5032289 - 5032359
Alignment:
| Q |
12 |
aatacttaccagaggtcaatggccttgacattcatctcatggcacaagtccaaacatgcttctgaataaag |
82 |
Q |
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| T |
5032289 |
aatacttaccagaggtcaatggccttgacattcatctcatggcacaaatccaaacatgcttctgaataaag |
5032359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 5037489 - 5037552
Alignment:
| Q |
19 |
accagaggtcaatggccttgacattcatctcatggcacaagtccaaacatgcttctgaataaag |
82 |
Q |
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| T |
5037489 |
accagaggtcaatggccttgacattcatgtcatgacacaagtccaaacatgcttctgagtaaag |
5037552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 396
Target Start/End: Original strand, 5038489 - 5038596
Alignment:
| Q |
289 |
aacacatgcattggacatgatactcatttagaaaccaataataatttcagaaaatgaaaatgatagaatgtaactatatgtgtcgatgtcggtatcatga |
388 |
Q |
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| T |
5038489 |
aacacaggcgttggacaagataatcatgtagaaacaaacaatagtttcaaaaactgaatatgatagaatgtaactagatgtgtcaacgtcggcatcatga |
5038588 |
T |
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| Q |
389 |
caacaaaa |
396 |
Q |
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| T |
5038589 |
caacaaaa |
5038596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 25094737 - 25094789
Alignment:
| Q |
27 |
tcaatggccttgacattcatctcatggcacaagtccaaacatgcttctgaata |
79 |
Q |
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| T |
25094737 |
tcaatggccttgatattcatctcgcggcaaagttccaaacatgcttctgaata |
25094789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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