View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_23 (Length: 387)
Name: NF17080_high_23
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 372550 - 372259
Alignment:
| Q |
1 |
ttggcacacatggcgttcgacggttatgaatccgtaggaatcataattgccgagaaagagattcacacgcacgtttggagacattaaaatcatttgaatg |
100 |
Q |
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| T |
372550 |
ttggcacacatggtgttcgacggttgtgataccgtaggaatcataatttccgagaaagagattcgcacgcacgtttggagacattacaatcatttgaacg |
372451 |
T |
|
| Q |
101 |
ggtctccagtgtgctacgagcacctccctcgtccagaggggttgtgctacgagtaagctacctaaatgctggattcgggtttgtttagttattgagtcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
372450 |
ggtctccagtgtgctacgagcacctccctcgtccagaggggttgtgctgcgagtaagctacctaaatgctagattcgggtttgtttagttattgagtcta |
372351 |
T |
|
| Q |
201 |
agttaataggcctttgagcacttgctcggtcaagaacaatggtcaagtaaaaaacatgattaatgtacattataaaattgtacgacatcttt |
292 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
372350 |
agttaatgggcctttgagcacttgctcggtcaagaacaatggtcaagtaaaaaacatgattaatgtagattataaaattgtacgacatcttt |
372259 |
T |
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