View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_high_24 (Length: 386)

Name: NF17080_high_24
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_high_24
NF17080_high_24
[»] chr5 (3 HSPs)
chr5 (17-376)||(17777544-17777903)
chr5 (145-204)||(6738521-6738580)
chr5 (167-211)||(33961593-33961637)
[»] chr7 (2 HSPs)
chr7 (134-212)||(753307-753385)
chr7 (142-208)||(19624119-19624185)
[»] chr8 (7 HSPs)
chr8 (300-363)||(24258411-24258474)
chr8 (167-218)||(6950219-6950270)
chr8 (135-212)||(11119103-11119180)
chr8 (136-212)||(34563139-34563215)
chr8 (175-213)||(29972964-29973002)
chr8 (167-212)||(5226491-5226536)
chr8 (168-212)||(40888454-40888498)
[»] chr6 (6 HSPs)
chr6 (137-212)||(9833203-9833278)
chr6 (167-212)||(14340939-14340984)
chr6 (135-210)||(33068665-33068740)
chr6 (166-212)||(32408835-32408881)
chr6 (167-212)||(4247220-4247265)
chr6 (167-212)||(31828921-31828966)
[»] chr2 (8 HSPs)
chr2 (167-214)||(15377446-15377493)
chr2 (304-363)||(28628516-28628575)
chr2 (304-342)||(28613867-28613905)
chr2 (170-208)||(33232081-33232119)
chr2 (170-221)||(15114477-15114528)
chr2 (135-212)||(32098412-32098492)
chr2 (183-212)||(9477868-9477897)
chr2 (135-208)||(42974245-42974318)
[»] chr1 (6 HSPs)
chr1 (135-212)||(49560663-49560740)
chr1 (142-212)||(10854530-10854600)
chr1 (167-217)||(46504353-46504402)
chr1 (142-212)||(52013786-52013856)
chr1 (167-212)||(12519106-12519151)
chr1 (167-212)||(30237882-30237927)
[»] scaffold0085 (1 HSPs)
scaffold0085 (167-222)||(26177-26232)
[»] scaffold0091 (1 HSPs)
scaffold0091 (167-212)||(5908-5953)
[»] chr4 (3 HSPs)
chr4 (183-212)||(8422989-8423018)
chr4 (167-208)||(18512555-18512596)
chr4 (136-212)||(22684621-22684697)
[»] chr3 (3 HSPs)
chr3 (144-209)||(26603086-26603151)
chr3 (147-212)||(36139665-36139730)
chr3 (146-210)||(39342924-39342988)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 17777903 - 17777544
Alignment:
Q  17 ttttgttgataaaagttagacatgcaaaacattaatgtaacctgcgaacatcccaactaggttagcacc---actattatcaatcttctttcgtatgcgg 113  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  17777903 ttttgttgataaaagttagacatgcaaaacattaacgtagcctgcgaacatcccaactaggttagcaccttaactattatcaatcttctttcgtatgcgg 17777804  T
Q  114 cctatattgaaccagttttaattttgtaatagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgtttac 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17777803 cctatattgaaccagttttacttttgtaatagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgtttac 17777704  T
Q  214 ctaaagaggctaagttcagtttgaaacaagtgcttataaagggttatatatgtgaagaatcaacaacatagatatatatgtgtcttgtcttacttggaag 313  Q
    | |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||   |||||||||||||||||||||||||||||||    
T  17777703 ccaaagaggctaagttcagtttgaaaaaagtgcttataaagggttatgtatgtgaagaaccaacaa---agatatatatgtgtcttgtcttacttggaag 17777607  T
Q  314 atcccaaggatcatatttatagatatcaagctgcttaatgagctcaatagacagaggcctttg 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  17777606 atcccaaggatcatatttatagatatcaagctgcttaatgagctcaattgatagaggcctttg 17777544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 6738521 - 6738580
Alignment:
Q  145 gaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaa 204  Q
    |||||| |||||| | ||||  ||||||||||||||| |||||||||||| |||||||||    
T  6738521 gaaatagcttatacataagtacttatatgataagtgtttatgctataaactcttaattaa 6738580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 33961637 - 33961593
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgttt 211  Q
    ||||||||||||||  ||| |||||||||||||||||||| ||||    
T  33961637 ttatatgataagtgcttatactataaacacttaattaagtcgttt 33961593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 753307 - 753385
Alignment:
Q  134 attttgtaatagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    ||||||| |||||||||   |||| ||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  753307 attttgttatagaaatagtgtatacacaagcgcttatatgataaatgtttatgctataaacacttaattaagttgttta 753385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 19624185 - 19624119
Alignment:
Q  142 atagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttg 208  Q
    |||||||||||||||||| |||   ||||||||||||||| |||||||| |||| ||||| ||||||    
T  19624185 atagaaatatcttatatataagcccttatatgataagtgtttatgctattaacatttaataaagttg 19624119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 300 - 363
Target Start/End: Original strand, 24258411 - 24258474
Alignment:
Q  300 gtcttacttggaagatcccaaggatcatatttatagatatcaagctgcttaatgagctcaatag 363  Q
    ||||||||||| |||||||| |||||| ||||||| |||||||||||||| ||||| |||||||    
T  24258411 gtcttacttggtagatcccatggatcaaatttataaatatcaagctgcttgatgagttcaatag 24258474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 6950270 - 6950219
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgtttacctaaa 218  Q
    |||||||||||| || |||||||||| ||||||||||||||||||| |||||    
T  6950270 ttatatgataagcgtttatgctataagcacttaattaagttgtttatctaaa 6950219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 11119103 - 11119180
Alignment:
Q  135 ttttgtaatagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    |||||| ||||||||||| |||| | ||| | |||||||||| ||   ||||||||||||||||||| ||||||||||    
T  11119103 ttttgttatagaaatatcgtatacataagcgattatatgatatgtagttatgctataaacacttaatcaagttgttta 11119180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 34563215 - 34563139
Alignment:
Q  136 tttgtaatagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    ||||| ||||||||| |||||||| |||   ||||||||||| ||| |||||||||| |  ||||||||||||||||    
T  34563215 tttgtcatagaaataacttatatataagcacttatatgataaatgtttatgctataagcgtttaattaagttgttta 34563139  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 29973002 - 29972964
Alignment:
Q  175 taagtgtgtatgctataaacacttaattaagttgtttac 213  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  29973002 taagtgtttatgctataaacactcaattaagttgtttac 29972964  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 5226536 - 5226491
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    ||||||||||| ||| ||||||||||||| || |||||||||||||    
T  5226536 ttatatgataaatgtttatgctataaacagttgattaagttgttta 5226491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 40888498 - 40888454
Alignment:
Q  168 tatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    |||||||||||||| ||||||||||   |||||||||||||||||    
T  40888498 tatatgataagtgtatatgctataagtgcttaattaagttgttta 40888454  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 9833203 - 9833278
Alignment:
Q  137 ttgtaatagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    ||||||||||||||||||||| | |||   |||||||||||  |  |||| |||||||||||||||||||||||||    
T  9833203 ttgtaatagaaatatcttatagagaagcacttatatgataaacgcttatgttataaacacttaattaagttgttta 9833278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 14340939 - 14340984
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||    
T  14340939 ttatatgataagtgtttatgttataagcacttaattaagttgttta 14340984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 33068665 - 33068740
Alignment:
Q  135 ttttgtaatagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgtt 210  Q
    |||||| ||||||||| |||||| | |||  ||||| ||||||| |  ||||||||||||||||||||||| ||||    
T  33068665 ttttgttatagaaataacttatacataagcatttatttgataagcgcttatgctataaacacttaattaagctgtt 33068740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 32408881 - 32408835
Alignment:
Q  166 tttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    |||||||||| |  || ||||||||||||||||||||||||||||||    
T  32408881 tttatatgatcatagtttatgctataaacacttaattaagttgttta 32408835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 4247220 - 4247265
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    |||||||||||||   |||||||||| |||||||||||||||||||    
T  4247220 ttatatgataagtacttatgctataagcacttaattaagttgttta 4247265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 31828966 - 31828921
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    ||||||||||||||| || ||||||| | |||||||||||||||||    
T  31828966 ttatatgataagtgtttacgctataagcgcttaattaagttgttta 31828921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 15377493 - 15377446
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgtttacc 214  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  15377493 ttatatgataagtgtgtatgttataagcacttaattcagttgtttacc 15377446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 28628575 - 28628516
Alignment:
Q  304 tacttggaagatcccaaggatcatatttatagatatcaagctgcttaatgagctcaatag 363  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||| || || |||||||    
T  28628575 tacttggaagatcccaaggatcatatttgtagatatcaatttgcttgataagatcaatag 28628516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 28613905 - 28613867
Alignment:
Q  304 tacttggaagatcccaaggatcatatttatagatatcaa 342  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  28613905 tacttggaagatcccaaggatcatatttgtagatatcaa 28613867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 33232081 - 33232119
Alignment:
Q  170 tatgataagtgtgtatgctataaacacttaattaagttg 208  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  33232081 tatgataagtgtgtatgctataagcacttaattaagttg 33232119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 15114528 - 15114477
Alignment:
Q  170 tatgataagtgtgtatgctataaacacttaattaagttgtttacctaaagag 221  Q
    |||||||||||| |||| | ||||||||||||||||||||| | ||||||||    
T  15114528 tatgataagtgtttatgttgtaaacacttaattaagttgttgatctaaagag 15114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 32098412 - 32098492
Alignment:
Q  135 ttttgtaatagaaatatcttatatacaagtgttta---tatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    |||||| ||||||||| |||||||| |||  ||||   |||||||| ||| |||||||||| ||||||| |||||||||||    
T  32098412 ttttgttatagaaatagcttatatataagcatttagtatatgataactgtttatgctataagcacttaagtaagttgttta 32098492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Complemental strand, 9477897 - 9477868
Alignment:
Q  183 tatgctataaacacttaattaagttgttta 212  Q
    ||||||||||||||||||||||||||||||    
T  9477897 tatgctataaacacttaattaagttgttta 9477868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 42974318 - 42974245
Alignment:
Q  135 ttttgtaatagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttg 208  Q
    |||||| |||||||||  ||||| |||||   | ||||||||||||| |||||||||| | |||||||||||||    
T  42974318 ttttgttatagaaatagtttatacacaagcactaatatgataagtgtttatgctataagctcttaattaagttg 42974245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 49560663 - 49560740
Alignment:
Q  135 ttttgtaatagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    |||||| ||| |||||| ||||||| |||   ||||||||| ||||  |||||||||||||||||| |||||||||||    
T  49560663 ttttgttatataaatatattatatataagcacttatatgattagtgcatatgctataaacacttaagtaagttgttta 49560740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 10854530 - 10854600
Alignment:
Q  142 atagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    |||| |||| |||||| | ||||| ||| ||||||||||  |||| |||||||||||||||||| ||||||    
T  10854530 atagtaatagcttataaataagtgcttaaatgataagtgcatatgttataaacacttaattaagctgttta 10854600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 46504353 - 46504402
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgtttacctaa 217  Q
    |||||||||||| |  |||||||||||||||||| ||||||||||||||||    
T  46504353 ttatatgataagagcttatgctataaacacttaa-taagttgtttacctaa 46504402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 52013856 - 52013786
Alignment:
Q  142 atagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    ||||||||| |||||| | |||  |||| ||||||||| | ||||||||||||  ||||||||||||||||    
T  52013856 atagaaatagcttatacataagcatttacatgataagtatttatgctataaacgtttaattaagttgttta 52013786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 12519106 - 12519151
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    |||||| ||| |||| ||||||||||||||||| ||||||||||||    
T  12519106 ttatataataggtgtttatgctataaacacttagttaagttgttta 12519151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 30237882 - 30237927
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    |||||| |||||||  ||||||||| ||||||||||||||||||||    
T  30237882 ttatataataagtgcttatgctatagacacttaattaagttgttta 30237927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 26177 - 26232
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgtttacctaaagagg 222  Q
    ||||||||||||||  |||||||||| |||||||||||| |||||| | |||||||    
T  26177 ttatatgataagtgcttatgctataagcacttaattaaggtgtttatccaaagagg 26232  T

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Target: scaffold0091 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 5953 - 5908
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    ||||||||||| ||| ||||||||||||| || |||||||||||||    
T  5953 ttatatgataaatgtttatgctataaacagttgattaagttgttta 5908  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 8422989 - 8423018
Alignment:
Q  183 tatgctataaacacttaattaagttgttta 212  Q
    ||||||||||||||||||||||||||||||    
T  8422989 tatgctataaacacttaattaagttgttta 8423018  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 18512555 - 18512596
Alignment:
Q  167 ttatatgataagtgtgtatgctataaacacttaattaagttg 208  Q
    ||||||||||| ||| |||||||||| |||||||||||||||    
T  18512555 ttatatgataaatgtttatgctataagcacttaattaagttg 18512596  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 22684621 - 22684697
Alignment:
Q  136 tttgtaatagaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    ||||| ||||||||| |||||| | |||  ||||||||||||| |  |||| ||||| || ||||||||||||||||    
T  22684621 tttgttatagaaatagcttatacagaagcatttatatgataagcgcatatggtataagcaattaattaagttgttta 22684697  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 26603151 - 26603086
Alignment:
Q  144 agaaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgt 209  Q
    ||||||||  |||| | |||| |||||||| |||| ||||||||||| | ||||||||||||||||    
T  26603151 agaaatatactatacataagtatttatatggtaagcgtgtatgctattagcacttaattaagttgt 26603086  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 36139665 - 36139730
Alignment:
Q  147 aatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgttta 212  Q
    |||| |||||| | ||||| ||| ||||||||||  |||| |||||||||||||||||| ||||||    
T  36139665 aatagcttataaataagtgcttaaatgataagtgcatatgttataaacacttaattaagctgttta 36139730  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 39342988 - 39342924
Alignment:
Q  146 aaatatcttatatacaagtgtttatatgataagtgtgtatgctataaacacttaattaagttgtt 210  Q
    ||||| |||||  ||||||  ||| ||||||||||  |||||||||||| |||||||||||||||    
T  39342988 aaatagcttattcacaagtacttaaatgataagtgattatgctataaacgcttaattaagttgtt 39342924  T

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