View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_27 (Length: 377)
Name: NF17080_high_27
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 363
Target Start/End: Complemental strand, 9277802 - 9277426
Alignment:
| Q |
6 |
tctcattaactttttattgtg--ttctgtatgtttttcttatgttatgttacttcaaaatttgaaatgcctcgtagaattttgcttgatccaatagggat |
103 |
Q |
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| T |
9277802 |
tctcattaactctttattatgcgttctttatgtttttcttttgttatgttacttaaaaatttgaaattcctcgtagaatttcgcttgatccgatagggat |
9277703 |
T |
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| Q |
104 |
gactcaataaatctttgatagcctttgatattatcttagaatttacattgaacttaatttaacccgtacaaattcggtttgtaaagtgaagaatgttcac |
203 |
Q |
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| T |
9277702 |
ggctcaataaatctttgatagactttgatattatcttagaatttacgttgaacttaatttaacccttacaaattcggtttgtaaagtgaagaatgttcac |
9277603 |
T |
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| Q |
204 |
ggtttataaatatattttcaggttatatctcatcca-----------------atgccgattctaatttggactcaatttcatgacagatagatcatttg |
286 |
Q |
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| T |
9277602 |
ggtttataaatatattttcaggttatatctcatccaatgcgtgattcttaacaatgccgattctaatttggactcaatttcatgacagatagatcatttg |
9277503 |
T |
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| Q |
287 |
aacctaccgatgacatataaaggagttgttgtgtctttgaaccctctaaagattccttgcatggctaaggagagaag |
363 |
Q |
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| T |
9277502 |
aacctaccgatgacatataaaggagttgttgtgtctttgaaccctctaaagattccttgcatggccaaggagagaag |
9277426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 13750195 - 13750128
Alignment:
| Q |
296 |
atgacatataaaggagttgttgtgtctttgaaccctctaaagattccttgcatggctaaggagagaag |
363 |
Q |
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| T |
13750195 |
atgacatataaaggagttgttacatctttgaaccctctaaagattccttgcattgccaatgagagaag |
13750128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 13631341 - 13631269
Alignment:
| Q |
291 |
taccgatgacatataaaggagttgttgtgtctttgaaccctctaaagattccttgcatggctaaggagagaag |
363 |
Q |
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| T |
13631341 |
taccaatgacatataaaggagttgttgtgtccttaaatcctcgaaatattccttgcattgccaatgagagaag |
13631269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 13731753 - 13731681
Alignment:
| Q |
291 |
taccgatgacatataaaggagttgttgtgtctttgaaccctctaaagattccttgcatggctaaggagagaag |
363 |
Q |
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| T |
13731753 |
taccaatgacatataaaggagttgttgtgtccttaaatcctcgaaatattccttgcattgccaatgagagaag |
13731681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 3333970 - 3333936
Alignment:
| Q |
207 |
ttataaatatattttcaggttatatctcatccaat |
241 |
Q |
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| T |
3333970 |
ttataaagatattttcaggttatatctcatccaat |
3333936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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