View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17080_high_4 (Length: 600)
Name: NF17080_high_4
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_4 |
 | |
|
| [»] scaffold0710 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 14 - 599
Target Start/End: Original strand, 51807462 - 51808034
Alignment:
| Q |
14 |
atatatcatcagtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51807462 |
atatatcatcagtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactt |
51807561 |
T |
|
| Q |
114 |
tcttttccttgacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgctttattgtttcaggtttaaca |
213 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51807562 |
tcttttccttgac---agatgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacata----gagtgctttattgtttcaggtttaaca |
51807654 |
T |
|
| Q |
214 |
aattcgaacaagaaaagacttgctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51807655 |
aattcgaacaagaaaagacttgctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctag |
51807754 |
T |
|
| Q |
314 |
atatatggtataatatacgaaaaccattttccatttctgtgtagtatctatatcagcttaactcctcttgcagttgctagttgagttgcgcgtatctaat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
51807755 |
atatatggtataatatacgaaaaccattttccatttctgtgtagtatctatatcagctttactcctc------ttgctagttgagttgcgcatatctaat |
51807848 |
T |
|
| Q |
414 |
tctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51807849 |
tctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattcttcaaatg |
51807948 |
T |
|
| Q |
514 |
ggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtattatctacccac |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |
|
|
| T |
51807949 |
ggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcacagtgttatctatccac |
51808034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 51779766 - 51780046
Alignment:
| Q |
21 |
atcagtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttc |
120 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51779766 |
atcagtttcaaagttcgataaacagatacatacttgattctgcctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcttttc |
51779865 |
T |
|
| Q |
121 |
cttgacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgctttattgtttcaggtttaacaaattcga |
220 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51779866 |
cttgacgacagacgaatcatgaacatctaatttcgctaggtattgaatgttttacca----atatagagtgctttattgtttcaggtttaacaaattcaa |
51779961 |
T |
|
| Q |
221 |
acaagaaaagactt----gctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact |
297 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
51779962 |
acaagaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact |
51780046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 51771893 - 51772170
Alignment:
| Q |
21 |
atcagtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttc |
120 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
51771893 |
atcagttccaaaattccgttaacagatacttacttgattctacctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcatttc |
51771992 |
T |
|
| Q |
121 |
cttgacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgcttt--attgtttcaggtttaacaaattc |
218 |
Q |
| |
|
||| || |||||||||||||| ||| | | ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51771993 |
ctttac---agacgaatcatgaaaatcgatct-------gtattgatggttttaccaa----tatagagtgctttttattgtttcaggtttaacaaattc |
51772078 |
T |
|
| Q |
219 |
gaacaagaaaagacttgctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcc |
310 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
51772079 |
gaacaagaaaaggcttgctagaaaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttcc |
51772170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 405 - 593
Target Start/End: Original strand, 51803887 - 51804075
Alignment:
| Q |
405 |
gtatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaatt |
504 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
51803887 |
gtatctaattctctttatataactctgaaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaatt |
51803986 |
T |
|
| Q |
505 |
cttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtattatct |
593 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51803987 |
cttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgtgagagaaggagagaggctatcaaaagtttcgcagtgttatct |
51804075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 434 - 553
Target Start/End: Original strand, 51772294 - 51772413
Alignment:
| Q |
434 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
533 |
Q |
| |
|
|||||||||| ||| || |||||||||| ||| ||||||| ||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51772294 |
aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt |
51772393 |
T |
|
| Q |
534 |
tacgcaatattttagtgtga |
553 |
Q |
| |
|
|| || ||||||||||||| |
|
|
| T |
51772394 |
tatgcggtattttagtgtga |
51772413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 434 - 553
Target Start/End: Original strand, 51780160 - 51780279
Alignment:
| Q |
434 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
533 |
Q |
| |
|
|||||||| | ||| | ||||||||||| ||| ||||||||| ||||| ||||||||||||||| |||||||| || ||||||||||||| ||| | || |
|
|
| T |
51780160 |
aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt |
51780259 |
T |
|
| Q |
534 |
tacgcaatattttagtgtga |
553 |
Q |
| |
|
|| ||| ||||||||||||| |
|
|
| T |
51780260 |
tatgcactattttagtgtga |
51780279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 51803793 - 51803853
Alignment:
| Q |
238 |
aggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagactt |
298 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
51803793 |
aggaaggccgatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagactt |
51803853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 535
Target Start/End: Original strand, 51761302 - 51761406
Alignment:
| Q |
432 |
aaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagctta-ggggctcaaattcttcaaatgggtggagtggagaaagt |
530 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| ||||||||||||||| || || | ||||||| ||||||| || |||||| |||||||||| | |
|
|
| T |
51761302 |
aaaaatttcagtgagagtgggagaaaacatatcagaaacaataaagaggaagttaagtacagggggctcgaattcttgaagtgggtgaagtggagaaaat |
51761401 |
T |
|
| Q |
531 |
gttta |
535 |
Q |
| |
|
||||| |
|
|
| T |
51761402 |
gttta |
51761406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 51803593 - 51803689
Alignment:
| Q |
26 |
tttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttcct |
122 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||| |||||||||| ||| | || |||| || |||| ||||||||| ||||| ||||||| |
|
|
| T |
51803593 |
tttcaaaaatcagttaacagatacttacttgattctgccactcatcaatgtcaactttcaaccaaacaacaaaacaaaagtaaaactttattttcct |
51803689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 6408 - 6688
Alignment:
| Q |
21 |
atcagtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6408 |
atcagtttcaaaattcgattaacagatacatacttgattctgcctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcttttc |
6507 |
T |
|
| Q |
121 |
cttgacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgctttattgtttcaggtttaacaaattcga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6508 |
cttgacgacagacgaatcatgaatatcaaatttcgctaggtattgaatgttttacca----atatagagtgctttattgtttcaggtttaacaaattcaa |
6603 |
T |
|
| Q |
221 |
acaagaaaagactt----gctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact |
297 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
6604 |
acaagaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact |
6688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 434 - 553
Target Start/End: Original strand, 6802 - 6921
Alignment:
| Q |
434 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
533 |
Q |
| |
|
|||||||| | ||| | ||||||||||| ||| ||||||||| ||||| ||||||||||||||| |||||||| || ||||||||||||| ||| | || |
|
|
| T |
6802 |
aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt |
6901 |
T |
|
| Q |
534 |
tacgcaatattttagtgtga |
553 |
Q |
| |
|
|| ||| ||||||||||||| |
|
|
| T |
6902 |
tatgcactattttagtgtga |
6921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University