View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_high_48 (Length: 303)

Name: NF17080_high_48
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_high_48
NF17080_high_48
[»] chr5 (13 HSPs)
chr5 (110-287)||(39858646-39858823)
chr5 (1-111)||(39858470-39858580)
chr5 (177-287)||(39849321-39849431)
chr5 (123-287)||(39866281-39866443)
chr5 (123-287)||(39912544-39912706)
chr5 (123-286)||(38967273-38967432)
chr5 (205-287)||(37467679-37467761)
chr5 (1-72)||(39865852-39865921)
chr5 (123-287)||(39899621-39899782)
chr5 (1-72)||(39848774-39848845)
chr5 (205-240)||(39727642-39727677)
chr5 (205-287)||(39734733-39734815)
chr5 (232-284)||(39869096-39869148)
[»] chr3 (1 HSPs)
chr3 (206-283)||(36057927-36058004)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 110 - 287
Target Start/End: Original strand, 39858646 - 39858823
Alignment:
Q  110 cagtattctcagtacattagtacttgtatttcaatcctcaattaacaagatacggtttttgtctaattttccaatgtaagagtgtaactgatgatatgat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858646 cagtattctcagtacattagtacttgtatttcaatcctcaattaacaagatacggtttttgtctaattttccaatgtaagagtgtaactgatgatatgat 39858745  T
Q  210 accttgaaaacgttaaatgacgtctgcttttcaacacggaaactcctcactttgtcaaggtctacgagatcaaaatat 287  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39858746 accttgaaaacgttaaatgacgtctgctttttaacacggaaactcctcactttgtcaaggtctacgagatcaaaatat 39858823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 39858470 - 39858580
Alignment:
Q  1 tttaaaataattgtttcctatatgaggattcatctaaaataatgattttctcttaagcagttcacaaactaattaaccagcatgtcttaaaggccattga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858470 tttaaaataattgtttcctatatgaggattcatctaaaataatgattttctcttaagcagttcacaaactaattaaccagcatgtcttaaaggccattga 39858569  T
Q  101 attcccttgca 111  Q
    |||||||||||    
T  39858570 attcccttgca 39858580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 177 - 287
Target Start/End: Original strand, 39849321 - 39849431
Alignment:
Q  177 tttccaatgtaagagtgtaactgatgatatgataccttgaaaacgttaaatgacgtctgcttttcaacacggaaactcctcactttgtcaaggtctacga 276  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||||||||| |    
T  39849321 tttccaatgtaagagagtaaccgatgatacgataccttgaaaacgttaaacgacgcctgcttttgaacacggaaactcctcactttatcaaggtctacaa 39849420  T
Q  277 gatcaaaatat 287  Q
    |||||||||||    
T  39849421 gatcaaaatat 39849431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 287
Target Start/End: Original strand, 39866281 - 39866443
Alignment:
Q  123 acattagtacttgtatttcaatcctcaattaacaagatacggtttttgtctaattttccaatgtaagagtgtaactgatgatatgataccttgaaaacgt 222  Q
    |||||||| ||||||  ||||||||||||| | ||||| | | |||  ||| ||||| ||| |||||| |||||||||||||  ||||||||||||| ||    
T  39866281 acattagtgcttgtacatcaatcctcaattgataagattcagatttcctcttattttacaacgtaagactgtaactgatgat--gataccttgaaaatgt 39866378  T
Q  223 taaatgacgtctgcttttcaacacggaaactcctcactttgtcaaggtctacgagatcaaaatat 287  Q
    |||||||| ||||||||| |||| ||||| ||||||||||||||  |||||||||||||||||||    
T  39866379 taaatgacatctgcttttgaacatggaaaatcctcactttgtcatagtctacgagatcaaaatat 39866443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 123 - 287
Target Start/End: Original strand, 39912544 - 39912706
Alignment:
Q  123 acattagtacttgtatttcaatcctcaattaacaagatacggtttttgtctaattttccaat-gtaagagtgtaactgatgatatgataccttgaaaacg 221  Q
    |||||||| |||||| ||||||| |||||||||||||| | |||||  |||||||||||  | |||| ||||||| |||||||  |||||||||||||||    
T  39912544 acattagtgcttgtacttcaatcatcaattaacaagattccgttttc-tctaattttcccgttgtaatagtgtaattgatgat--gataccttgaaaacg 39912640  T
Q  222 ttaaatgacgtctgcttttcaacacggaaactcctcactttgtcaaggtctacgagatcaaaatat 287  Q
    |||||||| |||||||||| ||||| |||||||||||||||  || ||||||| |||| |||||||    
T  39912641 ttaaatgatgtctgcttttgaacacagaaactcctcactttcccatggtctacaagattaaaatat 39912706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 123 - 286
Target Start/End: Complemental strand, 38967432 - 38967273
Alignment:
Q  123 acattagtacttgtatttcaatcctcaattaacaagatacggtttttgtctaattttccaatgtaagagtgtaactgatgatatgataccttgaaaacgt 222  Q
    |||||||| |||||| |||||||||||||||||||||| | |||||  | |||||||||| |   | ||||||| |||||||  ||||||||||||||||    
T  38967432 acattagtgcttgtacttcaatcctcaattaacaagattccgttttctt-taattttccatttgcatagtgtaattgatgat--gataccttgaaaacgt 38967336  T
Q  223 taaatgacgtctgcttttcaacacggaaactcctcactttgtcaaggtctacgagatcaaaata 286  Q
     ||| || |||||||| | |||||||||||| ||||| |||||| ||||||| |||||||||||    
T  38967335 gaaa-gatgtctgcttctgaacacggaaactgctcacattgtcatggtctacaagatcaaaata 38967273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 37467679 - 37467761
Alignment:
Q  205 atgataccttgaaaacgttaaatgacgtctgcttttcaacacggaaactcctcactttgtcaaggtctacgagatcaaaatat 287  Q
    ||||||||||||||||||||||||  ||||||||||  ||||||||||||| |||||||||| | ||||| ||||||||||||    
T  37467679 atgataccttgaaaacgttaaatggtgtctgcttttgtacacggaaactccgcactttgtcatgttctacaagatcaaaatat 37467761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39865852 - 39865921
Alignment:
Q  1 tttaaaataattgtttcctatatgaggattcatctaaaataatgattttctcttaagcagttcacaaactaa 72  Q
    |||||||||||||||| |||||  ||||| |||||||||||||||||||||||  |||||||||||||||||    
T  39865852 tttaaaataattgttttctata--aggatgcatctaaaataatgattttctctatagcagttcacaaactaa 39865921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 287
Target Start/End: Original strand, 39899621 - 39899782
Alignment:
Q  123 acattagtacttgtatttcaatcctcaattaacaagatacggtttttgtctaattttccaatgtaagagtgtaactgatgatatgataccttgaaaacgt 222  Q
    |||||||| |||||| ||||||  |||||||||||||| | |||||  ||||||||||    || | ||||||| |||||||  |||||||| ||| |||    
T  39899621 acattagtgcttgtacttcaattatcaattaacaagattccgttttc-tctaattttcggtagtcatagtgtaattgatgat--gatacctttaaatcgt 39899717  T
Q  223 taaatgacgtctgcttttcaacacggaaactcctcactttgtcaaggtctacgagatcaaaatat 287  Q
    |||||||  ||||| ||| ||||  |||| ||| |||||||||| ||||||| ||||||||||||    
T  39899718 taaatgatttctgcctttgaacatagaaaatccccactttgtcatggtctacaagatcaaaatat 39899782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39848774 - 39848845
Alignment:
Q  1 tttaaaataattgtttcctatatgaggattcatctaaaataatga--ttttctcttaagcagttcacaaactaa 72  Q
    ||||||||||||||||||  ||||| ||| |||||||||||||||  ||||||||||| | |||||||||||||    
T  39848774 tttaaaataattgtttcc--tatgacgatgcatctaaaataatgattttttctcttaatcggttcacaaactaa 39848845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 39727677 - 39727642
Alignment:
Q  205 atgataccttgaaaacgttaaatgacgtctgctttt 240  Q
    |||||||||||||||| |||||||||||||||||||    
T  39727677 atgataccttgaaaacattaaatgacgtctgctttt 39727642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 39734815 - 39734733
Alignment:
Q  205 atgataccttgaaaacgttaaatgacgtctgcttttcaacacggaaactcctcactttgtcaaggtctacgagatcaaaatat 287  Q
    |||||||||||||| | ||||||| ||| | |||   |||||| ||||| |||||||||||| |||| || ||||||||||||    
T  39734815 atgataccttgaaatctttaaatgtcgtattcttgggaacacgaaaactgctcactttgtcagggtcaacaagatcaaaatat 39734733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 39869096 - 39869148
Alignment:
Q  232 tctgcttttcaacacggaaactcctcactttgtcaaggtctacgagatcaaaa 284  Q
    |||| |||||||||  |||||||| ||||||  ||||||||||||||||||||    
T  39869096 tctgtttttcaacatagaaactccccacttttccaaggtctacgagatcaaaa 39869148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 36058004 - 36057927
Alignment:
Q  206 tgataccttgaaaacgttaaatgacgtctgcttttcaacacggaaactcctcactttgtcaaggtctacgagatcaaa 283  Q
    ||||||||||||||| ||||| |  ||||||||||  ||||||||||| |||||||||||  ||||||| ||||||||    
T  36058004 tgataccttgaaaacattaaaaggtgtctgcttttgtacacggaaacttctcactttgtcgtggtctacaagatcaaa 36057927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University