View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17080_high_51 (Length: 294)
Name: NF17080_high_51
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_51 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 48956992 - 48956728
Alignment:
| Q |
14 |
agacaccaaatcctagaagtatggatccagcattaaagtgtttatccctgtatgaacctttgataagctctttcctctcctgaatattagtaaccaacca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48956992 |
agacaccaaatcctagaagtatggatccagcattaaagtgtttatccctgtatgaacctttgataagctctttcctctcctgaatattagtaaccaacca |
48956893 |
T |
|
| Q |
114 |
acaaattatatatgtatagctccactcacaagttacaaacttactattaaaatccaggataccatagttaatgaaagaaactaccactgataataaagct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48956892 |
acaaattatatatgtatagctccactcacaagttacaaacttactattaaaatccaggataccatagttaatgaaagaaactaccactgataataaagct |
48956793 |
T |
|
| Q |
214 |
tgtactatatatgaagcatgcaattacctcagtaagtttctgaatttcaagttcaacgggtgatg |
278 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48956792 |
tgtactatgtatgaagcatgcaattacctcagtaagtttctgaatttcaagttcaacgggtgatg |
48956728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University