View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_56 (Length: 282)
Name: NF17080_high_56
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 1309394 - 1309168
Alignment:
| Q |
12 |
tattctattattttgtgggtgcttttaaataagttgtccatcctttcacnnnnnnnnnnngttgtt-atattaagaatattttgatgacacggnnnnnnn |
110 |
Q |
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| T |
1309394 |
tattctattattttgtgggtgcttttaaataagttgtccatcctttcaaaaaaaaaaaa--ttgttgatattaagaatattttgatgacacgtttttttt |
1309297 |
T |
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| Q |
111 |
naacttaactatagttatagttatgannnnnnnnnaaacaactaaaattgtgattataaatttaaatttgagcatgtgacatcgttagaatttttaagag |
210 |
Q |
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| T |
1309296 |
taacttaactatagttatgttttt--------tttaaagaactaaaatcgtgattataaatttaaatttgagcatccaacatcgttagaatttttaagag |
1309205 |
T |
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| Q |
211 |
tttgctattcatttaggtcttataaaacatgagagat |
247 |
Q |
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| T |
1309204 |
tttgctattcatttaggtcttataaaacttgagagat |
1309168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 1309059 - 1309014
Alignment:
| Q |
234 |
aaaacatgagagattagtctctatagttacgcgtagaatataactg |
279 |
Q |
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| T |
1309059 |
aaaacttgagagattggtctctataattacgcgtagaatataactg |
1309014 |
T |
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