View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17080_high_66 (Length: 249)
Name: NF17080_high_66
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_66 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 1307870 - 1308009
Alignment:
| Q |
18 |
cttccacaatccagtctctctagagtcattatgcctctgacgccg-tttcccaagcgaggccaagttaacccacctgacctcatatctc-----ctccaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
1307870 |
cttccacaatccagtctctctagagtcattatgcctctgacgccgttttcccaagcggggccaagttaacccacgtgacctcatatctccaagactccaa |
1307969 |
T |
|
| Q |
112 |
ctaacccaatgggattttcctatcccttttagacccaccc |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1307970 |
ctaacccaatgggattttcctatcccttttagacccaccc |
1308009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 1308809 - 1308880
Alignment:
| Q |
178 |
ctaacaaccctttttagacactttcatgaaagataaggacatgatccaagacatatataagaagaataacca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1308809 |
ctaacaaccctttttagacactttcatgaaagataaggacatgatccaagacatatataagaagaataacca |
1308880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University