View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_7 (Length: 547)
Name: NF17080_high_7
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 52585159 - 52584618
Alignment:
| Q |
1 |
cccaagtggtcataaatttaagtatgattttggcatgtgcagtgtatagtaatagtactcctccaagttagttt-gagctatcacatttatcttactgaa |
99 |
Q |
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| T |
52585159 |
cccaagtggtcataaatttaagtatgattttggcatgtgcagtgtatagtaatagtactcctccaagttagttttgagctatcacatttatcttactgaa |
52585060 |
T |
|
| Q |
100 |
tactagagctgcaatattcaaacatgaaacttgggatttgattgtgaccactgattatgctcaccaatgaatccactgctcaacctcaatagggcttcgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52585059 |
tactagagctgcaatattcaaacatgaaacttgggatttgattgtgaccactgattatgctcaccaatgaatccactgctcaacctcaatagggcttcgt |
52584960 |
T |
|
| Q |
200 |
gcacctagtacggattcaccacttctatgttaatgtcttattaactcatgtcttcagaatatatactatactagcttttttgctcaaatagtttcttcag |
299 |
Q |
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| T |
52584959 |
gcacctagtacggattcaccacttctatgttaatgtcttattaactcatgtcttcagaatatatactatactagcttttttgctcaaatagtttcttcag |
52584860 |
T |
|
| Q |
300 |
tacgtaaaaaacagtgttgattcgattcgattcgattccccctttcactccttttctctttttccataaaaatctctcttctttcactgttctagagaga |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584859 |
tacgtaaaaaacagtgttgattcgattcgattcgattccccctttcactccttttctccttttccataaaaatctctcttctttcactgttctagagaga |
52584760 |
T |
|
| Q |
400 |
tccacatcacaaaactcacatgcttcatttttccaattgagttgttcccttaagggacacaatacaatacaagtatagaactagtttattttttcaatca |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
52584759 |
tccacatcacaaaactcacatgcttcatttttccaattgagttgttcccttaagggacacaatacaatacaagtatagaactagtttatttattcaatca |
52584660 |
T |
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| Q |
500 |
ctttctctcagacnnnnnnngctagctacaattgatgatgtc |
541 |
Q |
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||||||||||||| ||||||||||||| |||||||| |
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| T |
52584659 |
ctttctctcagacaaaaaaagctagctacaattaatgatgtc |
52584618 |
T |
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