View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_76 (Length: 238)
Name: NF17080_high_76
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_76 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 10445163 - 10445065
Alignment:
| Q |
13 |
aagaaagagacacttcatttgtacacattctctacgaggtagttggtgactatctcatataggaacccattttagatcccacctgcatatatgtaattg |
111 |
Q |
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| T |
10445163 |
aagaaagagatacttcatttgtacacattctctacgaggtagttggtgactatctcatataggaacccattttagatcccacctgcatatatgtaattg |
10445065 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 10444999 - 10444955
Alignment:
| Q |
177 |
aggattcccagttgtattaattggtgtttatttaaatgttcctac |
221 |
Q |
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| T |
10444999 |
aggattcccagttgtattaattggtgtttatttaaatgttcctac |
10444955 |
T |
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