View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_81 (Length: 236)
Name: NF17080_high_81
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_81 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8025450 - 8025665
Alignment:
| Q |
1 |
tacaaactccaactgaaaaatcattagtgatgtacatatgatttataattgatacatacattagcaagttgtttgagaagtttcgacttggtatgatagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8025450 |
tacaaactccaactgaaaaatcattagtgaagtacatataatttataattgatacatacattagcaagttgtttgagaagtttcgacttggtatgatagt |
8025549 |
T |
|
| Q |
101 |
tgttataaatccatttttgtggagtgtataactccctttgtcttcgcccatctcatgtcagatattgagaattgaactagagagttgtgactctgcttca |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8025550 |
tgttataaatccatttttgtggagtgtataact-cctttgtcttcgcccatctcatgtcagatattga-----gaactagagagttgtgactctgcttca |
8025643 |
T |
|
| Q |
201 |
tttaattacgaactgctctatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
8025644 |
tttaattacgaactgctctatg |
8025665 |
T |
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