View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_82 (Length: 231)
Name: NF17080_high_82
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_82 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 7018565 - 7018367
Alignment:
| Q |
1 |
gtgaacattggtaggccacattatgaaagtctcacccctaatataaatcaaatatttctaatgatttaacatgattaattggccgtgtacaatctcttta |
100 |
Q |
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| T |
7018565 |
gtgaacattggtaggccacattatgaatgtctcacccctaataaaaatcaaatatttctaatgatt----------aattggccgtgtacaatctcttta |
7018476 |
T |
|
| Q |
101 |
caccggcgatatataatatgaattaaattaaaataattaatataaacaatttttggagtagtaaaacaagcacaatcgagattaatatgagttaagggga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7018475 |
caccggcgatatataatatgaattaaattaaaataattaatagaaataatttttggagtagtaaaacaagcacaatcgagattaatatgagttaagggga |
7018376 |
T |
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