View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_84 (Length: 228)
Name: NF17080_high_84
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_84 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 39442146 - 39441951
Alignment:
| Q |
16 |
aaaatctcgaatcgattatcaaacgctgtaatcaaaattcaaaacaggacgcaaatacattgagggagtgatgaagttactgaccctaggcataagctcg |
115 |
Q |
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| T |
39442146 |
aaaatctcgaatcgattatcaaacgctgtaatcaaaattcaaaacaggacgcaaatacattgagggagtgatcaagttactgaccctaggcataagctcg |
39442047 |
T |
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| Q |
116 |
gaaattaagcagcatttgacgtcgatggcgaggtcaccgcaaggttctaacagaaagagcatgaaattagctaggaagcggttacagtgatgatcg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39442046 |
gaaattaagcagcatttgacgtcgatggcgaggtcaccgcaaggttctaacagaaagagcatgaaattagctaggaagcggttacagtgatgatcg |
39441951 |
T |
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