View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_86 (Length: 217)
Name: NF17080_high_86
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_86 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 28025814 - 28025631
Alignment:
| Q |
20 |
ttatcaaatcactaatatatcactttcataacatcactctccttttctttttctccctagtagtagattggtttttgggtgtaaaatattattttccaat |
119 |
Q |
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| T |
28025814 |
ttatcaaatcactaatatatcactttcataacatcactctccttttctttttctccctagtagtagattggtttttgggtgtaaaatattattttccaat |
28025715 |
T |
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| Q |
120 |
tgttaataatgctagctgagacaaagttaatttattgcatgtgtgtttgtagggtttactacgcctgagggaaccatctgtgct |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28025714 |
tgttaataatgctagctgagacaaagttaatttattgcatatgtgtttgtagggtttactacgcctgagggaaccatctgtgct |
28025631 |
T |
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