View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_high_88 (Length: 208)
Name: NF17080_high_88
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_high_88 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 34558451 - 34558276
Alignment:
| Q |
16 |
aatattattgataatgaaaaaagaaaacagaataggaggaccataaaccaaactgatcaaagaaacttaacaaactcgataattggaaagatttgatcta |
115 |
Q |
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| T |
34558451 |
aatattattgataatgaaaaaagaaaacagaataggaggaccataaaccaaactgatcaaagaaacttaacaaactcgataattggaaagatttgatcta |
34558352 |
T |
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| Q |
116 |
tctttaaagaagacctctatggtagaattttgccaaatagacccatcaacataaaagtctacataagccaatttag |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34558351 |
tctttaaagaagacctctatggtagaattttgccaaatagacccatcaacataaaagtctacataagccaatttag |
34558276 |
T |
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