View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_14 (Length: 450)

Name: NF17080_low_14
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_14
NF17080_low_14
[»] chr6 (8 HSPs)
chr6 (18-450)||(372586-373018)
chr6 (90-134)||(9402512-9402556)
chr6 (37-179)||(10925518-10925663)
chr6 (90-133)||(34346136-34346179)
chr6 (90-162)||(8320887-8320960)
chr6 (340-389)||(14479939-14479988)
chr6 (348-389)||(29095223-29095264)
chr6 (349-389)||(7412309-7412349)
[»] chr8 (15 HSPs)
chr8 (88-178)||(17108297-17108388)
chr8 (17-179)||(5793433-5793598)
chr8 (88-180)||(39379653-39379745)
chr8 (88-173)||(6388586-6388672)
chr8 (70-160)||(29918508-29918601)
chr8 (378-447)||(34658604-34658673)
chr8 (90-137)||(28345414-28345461)
chr8 (96-178)||(35747265-35747346)
chr8 (94-138)||(8545466-8545510)
chr8 (90-161)||(36274966-36275037)
chr8 (340-389)||(22906402-22906451)
chr8 (90-135)||(30903969-30904014)
chr8 (239-268)||(36919688-36919717)
chr8 (94-161)||(12468311-12468379)
chr8 (189-229)||(40204831-40204871)
[»] chr3 (6 HSPs)
chr3 (43-179)||(27252441-27252580)
chr3 (76-136)||(27937646-27937708)
chr3 (271-302)||(38870594-38870625)
chr3 (96-137)||(3385974-3386015)
chr3 (92-137)||(3414651-3414696)
chr3 (119-179)||(40890299-40890359)
[»] chr1 (6 HSPs)
chr1 (37-137)||(13692513-13692615)
chr1 (119-180)||(5290371-5290434)
chr1 (355-389)||(24107011-24107045)
chr1 (43-137)||(42729062-42729158)
chr1 (92-158)||(25181129-25181197)
chr1 (88-135)||(45460163-45460211)
[»] chr4 (16 HSPs)
chr4 (78-173)||(25265229-25265326)
chr4 (90-180)||(8843879-8843970)
chr4 (90-180)||(8856843-8856934)
chr4 (88-161)||(36306712-36306786)
chr4 (98-179)||(21956890-21956971)
chr4 (90-162)||(33616208-33616281)
chr4 (32-136)||(21714095-21714201)
chr4 (90-135)||(39086085-39086130)
chr4 (94-179)||(42907820-42907905)
chr4 (59-136)||(55783402-55783479)
chr4 (59-136)||(55847584-55847661)
chr4 (95-178)||(16575046-16575130)
chr4 (91-149)||(37384203-37384262)
chr4 (333-407)||(25781822-25781895)
chr4 (92-180)||(35304591-35304680)
chr4 (94-134)||(30034607-30034647)
[»] chr5 (11 HSPs)
chr5 (26-135)||(12709365-12709476)
chr5 (88-180)||(12457438-12457531)
chr5 (26-135)||(12770615-12770726)
chr5 (96-162)||(457465-457532)
chr5 (90-161)||(35584040-35584111)
chr5 (21-180)||(40187731-40187893)
chr5 (358-440)||(10494245-10494327)
chr5 (267-301)||(15394239-15394273)
chr5 (90-179)||(17153092-17153182)
chr5 (348-382)||(31477585-31477619)
chr5 (92-144)||(7350518-7350571)
[»] chr7 (4 HSPs)
chr7 (18-110)||(6557871-6557965)
chr7 (93-149)||(11472817-11472874)
chr7 (85-136)||(30999906-30999957)
chr7 (366-443)||(32053874-32053952)
[»] chr2 (9 HSPs)
chr2 (18-179)||(17845466-17845623)
chr2 (88-159)||(13531871-13531943)
chr2 (90-160)||(30696848-30696919)
chr2 (126-180)||(11958975-11959030)
chr2 (90-137)||(35248499-35248546)
chr2 (348-389)||(19092675-19092716)
chr2 (90-135)||(25210301-25210346)
chr2 (268-296)||(45279205-45279233)
chr2 (268-296)||(45286604-45286632)
[»] scaffold0244 (1 HSPs)
scaffold0244 (90-137)||(4698-4745)
[»] scaffold0158 (1 HSPs)
scaffold0158 (354-429)||(27329-27404)
[»] scaffold1322 (1 HSPs)
scaffold1322 (93-175)||(1037-1120)


Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 373018 - 372586
Alignment:
Q  18 agggtgtcagatgtgaaatgagaagagagagaactaaaagaagtgggtatcgtctgatagattgagactcattgtgtgagtgaaatgatttaggatttag 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  373018 agggtgtcagatgtggaatgagaagagagagaactaaaagaagtgggtatcgtctgatagattgagactcattgtgtgtgtgaaatgatttaggatttag 372919  T
Q  118 atttctatttatataaaaggataataagttgactttttacattcatgatgagtttgggtatgaatacagggttgatattttgaaagtatgcatcgagata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  372918 atttctatttatataaaaggataataagttgactttttacattcatgatgagtttgggtatgaatacagggttgatattttgaaagtatgtatcgagaca 372819  T
Q  218 aatcgaacaacatctaatgtctatatttatatattaattaaaaatatggttgatcgtacctgatcagaaggtgactaccgacgcgatgcttgatggtggt 317  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  372818 aatcgaacaacatctaacatctatatttatatattaattaaaaatatggttgatcgtacctgatcagaaggtgactaccgacgcgatgcttgatggtggt 372719  T
Q  318 tgtatatgcttgatattgactagaacggcggggggttgtgtacctgctgacactccgacgctcaaatcagtattgaatgagaatgggggtagagagaatt 417  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  372718 tgtatatgcttgctattgactagaacggcggggggttgtatacctgctgacactctgacgctcaaatcagtattgaatgagaatgggggtagagagaatt 372619  T
Q  418 aagagattctaatattggggactgctaagaatc 450  Q
    |||||||||||||||||||||||||||||||||    
T  372618 aagagattctaatattggggactgctaagaatc 372586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 9402512 - 9402556
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaa 134  Q
    |||||||||||||||||||||| ||| | ||||||||||||||||    
T  9402512 tgtgtgagtgaaatgatttagggtttgggtttctatttatataaa 9402556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 10925663 - 10925518
Alignment:
Q  37 gagaagagagagaactaaaagaagtgggtatcgtctgatagattgagactc--attgtgtgagtgaaatgatttaggattt-agatttctatttatataa 133  Q
    |||||||||||||||| | ||||||| || |||| ||| ||| | | |||   ||||||| |||||||||||||||| ||| ||| ||||||||||||||    
T  10925663 gagaagagagagaacttagagaagtgagtgtcgtttgaaagactaaaactttgattgtgttagtgaaatgatttagggtttcaga-ttctatttatataa 10925565  T
Q  134 aagg-ataataagttgactttttacattcatgatgagtttgggtatg 179  Q
    |||| ||||||| ||   |||||||||||   |||||||| ||||||    
T  10925564 aaggaataataaattatttttttacattcggaatgagtttaggtatg 10925518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 34346179 - 34346136
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataa 133  Q
    |||||||||||||||||||||| ||| | |||||||||||||||    
T  34346179 tgtgtgagtgaaatgatttagggtttgggtttctatttatataa 34346136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 8320960 - 8320887
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaagga-taataagttgactttttacattca 162  Q
    ||||| |||||||||||||||| ||||  ||||||||||  |||| ||| ||||||||||| ||||| ||||||    
T  8320960 tgtgtaagtgaaatgatttagggtttaagtttctatttacgtaaatggagtaataagttgattttttgcattca 8320887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 14479939 - 14479988
Alignment:
Q  340 gaacggcggggggttgtgtacctgctgacactccgacgctcaaatcagta 389  Q
    ||||||||||||| ||||||||||| | |||||||||||| || ||||||    
T  14479939 gaacggcgggggggtgtgtacctgcaggcactccgacgctgaagtcagta 14479988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 29095264 - 29095223
Alignment:
Q  348 gggggttgtgtacctgctgacactccgacgctcaaatcagta 389  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||    
T  29095264 ggggggtgtgtacctgcagacactccgacgctcaagtcagta 29095223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 7412309 - 7412349
Alignment:
Q  349 ggggttgtgtacctgctgacactccgacgctcaaatcagta 389  Q
    |||| ||||||||||| ||||||||||||||||| ||||||    
T  7412309 gggggtgtgtacctgcagacactccgacgctcaagtcagta 7412349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 17108297 - 17108388
Alignment:
Q  88 attgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattcatgatgagtttgggtat 178  Q
    |||||||||||||||| ||||||| ||||  ||||||||||||||||| ||||||||| |||| |||||||| ||  |||||||||||||||    
T  17108297 attgtgtgagtgaaattatttagggtttaagtttctatttatataaaatggataataaattgattttttacaatcgggatgagtttgggtat 17108388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 5793433 - 5793598
Alignment:
Q  17 aagggtgtcagatgtgaaatgagaagagagagaactaaaagaagtgggtatcgtctgatagattgagactca--ttgtgtgagtgaaatgatttaggatt 114  Q
    |||||||| ||||||| || ||||| |||||||||| ||||||||| || ||||| || ||| | |||||    ||||||||||||||||||||||| ||    
T  5793433 aagggtgtgagatgtggaaggagaaaagagagaacttaaagaagtgagtgtcgtcagaaagacttagactttggttgtgtgagtgaaatgatttagggtt 5793532  T
Q  115 tagatttctatttatat-aaaaggataataagttgactttttacattcatgatgagtttgggtatg 179  Q
    |   ||||||||||||| |||| |||||| | |||| |||||||||| | || ||||||| |||||    
T  5793533 tgagtttctatttatataaaaatgataattaattgattttttacatttaggacgagtttgagtatg 5793598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 39379745 - 39379653
Alignment:
Q  88 attgtgtgagtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattcatgatgagtttgggtatga 180  Q
    ||||||| |||||||||||||| ||||| |||||||||||||| | ||||||||||| |||| ||  |||||||  || ||||||| ||||||    
T  39379745 attgtgtaagtgaaatgatttaagatttggatttctatttatacagaaggataataaattgatttactacattcgggacgagtttgagtatga 39379653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 6388672 - 6388586
Alignment:
Q  88 attgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattcatgatgagtttg 173  Q
    |||||||||||||||||||||||| ||| | ||||| ||||||||||| || |||||| |||| ||| |||||||| |||| |||||    
T  6388672 attgtgtgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttctacattcaggatgggtttg 6388586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 29918508 - 29918601
Alignment:
Q  70 tctgatagattgagactc--attgtgtgagtgaaatgatttaggatttagatttctatttatataaaag-gataataagttgactttttacatt 160  Q
    ||||| ||||||||||||  | |||||||||||||||||||||| |||   |||||||||||||||||| | |||||| |||| ||||||||||    
T  29918508 tctgaaagattgagactctaactgtgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattttttacatt 29918601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 447
Target Start/End: Complemental strand, 34658673 - 34658604
Alignment:
Q  378 ctcaaatcagtattgaatgagaatgggggtagagagaattaagagattctaatattggggactgctaaga 447  Q
    ||||| |||||||||| | |||| |||||| || |||| ||||||||||||| |||||||||||||||||    
T  34658673 ctcaagtcagtattgagtcagaaagggggttgaaagaaataagagattctaacattggggactgctaaga 34658604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 28345414 - 28345461
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaagg 137  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||||    
T  28345414 tgtgtgagtgaaatgatttagaatttcggtttctatttatataaaagg 28345461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 35747346 - 35747265
Alignment:
Q  96 agtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattcatgatgagtttgggtat 178  Q
    |||||||||||||||| || || |||||||||||||||| || |||||  |||| |||  |||||||||||| ||||||||||    
T  35747346 agtgaaatgatttaggtttgag-tttctatttatataaaggggtaatagattgattttcaacattcatgatgggtttgggtat 35747265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 8545510 - 8545466
Alignment:
Q  94 tgagtgaaatgatttaggatttagatttctatttatataaaagga 138  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||||    
T  8545510 tgagtgaaatgatttagggtttggatttctgtttatataaaagga 8545466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 36274966 - 36275037
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattc 161  Q
    ||||||||||||||||||||||  || | ||||||||||||||||| ||||| ||| |||| |||||||||||    
T  36274966 tgtgtgagtgaaatgatttagg-gttgggtttctatttatataaaagggatagtaaattgattttttacattc 36275037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 22906451 - 22906402
Alignment:
Q  340 gaacggcggggggttgtgtacctgctgacactccgacgctcaaatcagta 389  Q
    ||||||||| ||| ||||||||||  ||||||||||||||||| ||||||    
T  22906451 gaacggcggaggggtgtgtacctgaagacactccgacgctcaagtcagta 22906402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 30903969 - 30904014
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa 135  Q
    |||||||||||||||||||| | ||| | |||||||||||||||||    
T  30903969 tgtgtgagtgaaatgatttaaggttttggtttctatttatataaaa 30904014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 36919717 - 36919688
Alignment:
Q  239 tatatttatatattaattaaaaatatggtt 268  Q
    ||||||||||||||||||||||||||||||    
T  36919717 tatatttatatattaattaaaaatatggtt 36919688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 12468379 - 12468311
Alignment:
Q  94 tgagtgaaatgatttaggatttagatttctatttatat-aaaaggataataagttgactttttacattc 161  Q
    |||||||||| |||||||||||   ||||| ||||||| |||||| ||||||||||| ||| |||||||    
T  12468379 tgagtgaaataatttaggatttgcgtttctctttatataaaaagggtaataagttgattttctacattc 12468311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 40204831 - 40204871
Alignment:
Q  189 ttgatattttgaaagtatgcatcgagataaatcgaacaaca 229  Q
    |||||||||||||| ||| |||||||||||||| |||||||    
T  40204831 ttgatattttgaaaatattcatcgagataaatcaaacaaca 40204871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 179
Target Start/End: Original strand, 27252441 - 27252580
Alignment:
Q  43 agagagaactaaaagaagtgggtatcgtctgatagattgagactc--attgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggat 139  Q
    |||||||||||| | ||||| || || ||||| ||| ||| ||||  | |||||||||||||||||||| ||||| | ||||||||||||||||| || |    
T  27252441 agagagaactaagataagtgagtgtcatctgaaagactgatactctaactgtgtgagtgaaatgatttatgattttggtttctatttatataaaatgggt 27252540  T
Q  140 aataagttgactttttacattcatgatgagtttgggtatg 179  Q
    ||||| ||||  || |||||||| | ||||||||||||||    
T  27252541 aataaattgaaattctacattcagggtgagtttgggtatg 27252580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 27937646 - 27937708
Alignment:
Q  76 agattgagactca--ttgtgtgagtgaaatgatttaggatttagatttctatttatataaaag 136  Q
    |||||||||||||  | ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  27937646 agattgagactcaaatcgtgtgagtgaaatgatttagggtttaggtttctatttatataaaag 27937708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 302
Target Start/End: Original strand, 38870594 - 38870625
Alignment:
Q  271 tcgtacctgatcagaaggtgactaccgacgcg 302  Q
    ||||||||||||||||||||||||||||||||    
T  38870594 tcgtacctgatcagaaggtgactaccgacgcg 38870625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 3386015 - 3385974
Alignment:
Q  96 agtgaaatgatttaggatttagatttctatttatataaaagg 137  Q
    |||||||||||||||||||| ||||| |||||||| ||||||    
T  3386015 agtgaaatgatttaggatttcgatttttatttatagaaaagg 3385974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 3414696 - 3414651
Alignment:
Q  92 tgtgagtgaaatgatttaggatttagatttctatttatataaaagg 137  Q
    |||||||||||||||||||| ||| ||||| |||||||| ||||||    
T  3414696 tgtgagtgaaatgatttagggtttcgatttttatttatagaaaagg 3414651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 40890299 - 40890359
Alignment:
Q  119 tttctatttatataaaaggataataagttgactttttacattcatgatgagtttgggtatg 179  Q
    |||||||||||||| ||||||||||| |||| ||| ||||||   |||||| |||||||||    
T  40890299 tttctatttatatagaaggataataaattgattttctacatttgagatgagcttgggtatg 40890359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 13692513 - 13692615
Alignment:
Q  37 gagaagagagagaactaaaagaagtgggtatcgtctgatagattgagactc--attgtgtgagtgaaatgatttaggatttagatttctatttatataaa 134  Q
    ||||| ||||||||||| || ||||| || |||||||| ||| | ||||||  |||||||| ||||||||||||||| ||| | ||||||||||||||||    
T  13692513 gagaaaagagagaactataataagtgagtgtcgtctgaaagagtaagactctaattgtgtgggtgaaatgatttagggttttggtttctatttatataaa 13692612  T
Q  135 agg 137  Q
    |||    
T  13692613 agg 13692615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 5290434 - 5290371
Alignment:
Q  119 tttctatttatataaaag-gataataagttgactt-tttacattcatgatgagtttgggtatga 180  Q
    |||||||||||||||||| |||||||| |||| || ||||||||||||| ||||||| ||||||    
T  5290434 tttctatttatataaaagagataataatttgatttatttacattcatgacgagtttgtgtatga 5290371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 389
Target Start/End: Complemental strand, 24107045 - 24107011
Alignment:
Q  355 gtgtacctgctgacactccgacgctcaaatcagta 389  Q
    |||||||||||||||||||||||||||| ||||||    
T  24107045 gtgtacctgctgacactccgacgctcaagtcagta 24107011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 42729158 - 42729062
Alignment:
Q  43 agagagaactaaaagaagtgggtatcgtctgatagattgagactc--attgtgtgagtgaaatgatttaggatttagatttctatttatataaaagg 137  Q
    |||||||||||  | |||||||| |  ||||| ||| ||||||||  | |||||||||||||||||||||  | ||  |||||||||||||||||||    
T  42729158 agagagaactatgataagtgggtgttatctgaaagactgagactctgactgtgtgagtgaaatgatttagtgtataagtttctatttatataaaagg 42729062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 25181129 - 25181197
Alignment:
Q  92 tgtgagtgaaatgatttagga-tttagatttctatttatata-aaaggataataagttgactttttaca 158  Q
    |||||||||||| ||||| || ||||| |||||||||||||| || ||||| ||| |||||||||||||    
T  25181129 tgtgagtgaaattatttaagagtttaggtttctatttatatagaagggatagtaaattgactttttaca 25181197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 45460211 - 45460163
Alignment:
Q  88 attgtgtgagtgaaatgattta-ggatttagatttctatttatataaaa 135  Q
    |||||||||||||||||||||| || ||||  |||||||||||||||||    
T  45460211 attgtgtgagtgaaatgatttaggggtttatgtttctatttatataaaa 45460163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 25265326 - 25265229
Alignment:
Q  78 attgagactc--attgtgtgagtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattcatgatgagtttg 173  Q
    ||||||||||  ||||||||||| ||||||||||| ||||   |||||||||||||| ||||||||||| |||| ||| |||||||  ||||||||||    
T  25265326 attgagactctgattgtgtgagtaaaatgatttagaatttgagtttctatttatatagaaggataataaattgattttctacattcgagatgagtttg 25265229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 8843970 - 8843879
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatat-aaaaggataataagttgactttttacattcatgatgagtttgggtatga 180  Q
    |||||||||||||||||||||||||||  ||||||||||||| ||| || |||||| || | ||| |||||||| || | ||||||||||||    
T  8843970 tgtgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattcacgacgggtttgggtatga 8843879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 8856934 - 8856843
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatat-aaaaggataataagttgactttttacattcatgatgagtttgggtatga 180  Q
    |||||||||||||||||||||||||||  ||||||||||||| ||| || |||||| || | ||| |||||||| || | ||||||||||||    
T  8856934 tgtgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattcacgacgggtttgggtatga 8856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 36306712 - 36306786
Alignment:
Q  88 attgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattc 161  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||| || |||||| |||| ||| |||||||    
T  36306712 attgtgtaagtgaaatgatttatgatttcgatttctatttatataaaaggggtaataaattgattttctacattc 36306786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 21956971 - 21956890
Alignment:
Q  98 tgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattcatgatgagtttgggtatg 179  Q
    |||||||||||||| ||| | ||| ||||||||||||||| |||||| |||| ||| ||||||| | | |||||||||||||    
T  21956971 tgaaatgatttagggtttgggtttttatttatataaaagggtaataaattgattttctacattcgtaacgagtttgggtatg 21956890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 33616281 - 33616208
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattca 162  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||| || |||||| |||| ||| ||||||||    
T  33616281 tgtgtgagtgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttctacattca 33616208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 21714201 - 21714095
Alignment:
Q  32 gaaatgagaagagagagaactaaaagaagtgggtatcgtctgatagattgagactc--attgtgtgagtgaaatgatttaggatttagatttctatttat 129  Q
    |||| ||||| |||||||||||  ||||||| || || | ||| ||| ||||||||  ||||||| |||||||||||||||| |||   |||||||||||    
T  21714201 gaaaagagaaaagagagaactatgagaagtgagtgtcatttgagagactgagactctaattgtgtaagtgaaatgatttagggtttgagtttctatttat 21714102  T
Q  130 ataaaag 136  Q
    |||||||    
T  21714101 ataaaag 21714095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 39086085 - 39086130
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa 135  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||    
T  39086085 tgtgtgagtgaaatgatttagggtttaagtttctatttatataaaa 39086130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 42907820 - 42907905
Alignment:
Q  94 tgagtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattcatgatgagtttgggtatg 179  Q
    |||||||||||||||||| |||   ||||||||||||||||||  || ||| |||| ||| |||||||  || |||||||||||||    
T  42907820 tgagtgaaatgatttagggtttgagtttctatttatataaaagagtagtaaattgattttctacattcgggacgagtttgggtatg 42907905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 55783402 - 55783479
Alignment:
Q  59 agtgggtatcgtctgatagattgagactcattgtgtgagtgaaatgatttaggatttagatttctatttatataaaag 136  Q
    ||||||| ||||||||||||||||  || | | || |||||||||||||||||||||   |||||||| |||||||||    
T  55783402 agtgggtgtcgtctgatagattgactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaaag 55783479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 55847584 - 55847661
Alignment:
Q  59 agtgggtatcgtctgatagattgagactcattgtgtgagtgaaatgatttaggatttagatttctatttatataaaag 136  Q
    ||||||| ||||||||||||||||  || | | || |||||||||||||||||||||   |||||||| |||||||||    
T  55847584 agtgggtgtcgtctgatagattgactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaaag 55847661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 16575046 - 16575130
Alignment:
Q  95 gagtgaaatgatttaggatttagatttctatttata-taaaaggataataagttgactttttacattcatgatgagtttgggtat 178  Q
    ||||||||||||||| |||||   |||||||||||| ||||||| |||||| || | |||||||||| | || ||||||||||||    
T  16575046 gagtgaaatgatttatgatttgagtttctatttatattaaaagggtaataaattaattttttacatttaagacgagtttgggtat 16575130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 37384203 - 37384262
Alignment:
Q  91 gtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttga 149  Q
    ||||||||||||||||||||| |||  | |||||||||||||||| ||||||||| ||||    
T  37384203 gtgtgagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattga 37384262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 407
Target Start/End: Complemental strand, 25781895 - 25781822
Alignment:
Q  333 ttgactagaacggcggggggttgtgtacctgctgacactccgacgctcaaatcagtattgaatgagaatgggggt 407  Q
    |||||||||||||| | |||| |||||||||| |||||||||||||||||  ||||||   || |||||||||||    
T  25781895 ttgactagaacggcagagggt-gtgtacctgcagacactccgacgctcaagccagtatgagatcagaatgggggt 25781822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 35304680 - 35304591
Alignment:
Q  92 tgtgagtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattc-atgatgagtttgggtatga 180  Q
    |||| ||||||||||||||  |||   ||||| ||||||||||||| |||||| |||| ||  |||||||  ||||||||||||||||||    
T  35304680 tgtgggtgaaatgatttagagtttgagtttctttttatataaaagggtaataaattgatttcctacattctttgatgagtttgggtatga 35304591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 30034607 - 30034647
Alignment:
Q  94 tgagtgaaatgatttaggatttagatttctatttatataaa 134  Q
    |||||||||||||||||| ||| | ||||||||||||||||    
T  30034607 tgagtgaaatgatttagggtttgggtttctatttatataaa 30034647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 12709365 - 12709476
Alignment:
Q  26 agatgtgaaatgagaagagagagaactaaaagaagtgggtatcgtctgatagattgagac--tcattgtgtgagtgaaatgatttaggatttagatttct 123  Q
    |||||||||||||||||||| |||||| ||||||||| || |||| ||| ||| ||||||  |  ||||  ||||||||||||||||| |||  ||||||    
T  12709365 agatgtgaaatgagaagagaaagaacttaaagaagtgagtgtcgtttgaaagactgagactttggttgtacgagtgaaatgatttagggtttgaatttct 12709464  T
Q  124 atttatataaaa 135  Q
    |||||| |||||    
T  12709465 atttatgtaaaa 12709476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 12457438 - 12457531
Alignment:
Q  88 attgtgtgagtgaaatgatttaggatttagatttctatttata-taaaaggataataagttgactttttacattcatgatgagtttgggtatga 180  Q
    |||||||||||||||||||||||  ||||| |||||||||||| |||| || |||||| |||| ||| |||||||  || | ||||||||||||    
T  12457438 attgtgtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttctacattcgggacgggtttgggtatga 12457531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 12770615 - 12770726
Alignment:
Q  26 agatgtgaaatgagaagagagagaactaaaagaagtgggtatcgtctgatagattgagac--tcattgtgtgagtgaaatgatttaggatttagatttct 123  Q
    |||||||||||||||||||| |||||| ||||||||| || |||| ||| |||  |||||  |  ||||  ||||||||||||||||| |||  ||||||    
T  12770615 agatgtgaaatgagaagagaaagaacttaaagaagtgagtgtcgtttgaaagaccgagactttggttgtacgagtgaaatgatttagggtttgaatttct 12770714  T
Q  124 atttatataaaa 135  Q
    |||||| |||||    
T  12770715 atttatgtaaaa 12770726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 457532 - 457465
Alignment:
Q  96 agtgaaatgatttaggatttagatttctatttatataaaagg-ataataagttgactttttacattca 162  Q
    |||||||||||||||||||| | |||||||||||||||||||  |||||| |||| ||| ||||||||    
T  457532 agtgaaatgatttaggattttggtttctatttatataaaaggtgtaataaattgattttatacattca 457465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 35584040 - 35584111
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattc 161  Q
    ||||||||  |||||||||||| |||   ||||||||||||||||||| |||||| |||| ||| |||||||    
T  35584040 tgtgtgagcaaaatgatttagggtttgagtttctatttatataaaagggtaataaattgattttgtacattc 35584111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 40187893 - 40187731
Alignment:
Q  21 gtgtcagatgtgaaatgagaagagagagaactaaaagaagtgggtatcgtctgatagattgagactc--attgtgtgagtgaaatgatttaggatttaga 118  Q
    |||| |||| || |||||||  |||||||||||  | ||||| || || ||||| ||||||| ||||  | | ||||||| ||||||||||||||||  |    
T  40187893 gtgtgagatatggaatgagataagagagaactatgataagtgagtgtcatctgaaagattgaaactctgactatgtgagtaaaatgatttaggattttca 40187794  T
Q  119 tttctatttatataaaag-gataataagttgactttttacattcatgatgagtttgggtatga 180  Q
    || ||||||||||||||| | |||||| || | ||| || ||||  || ||||||||||||||    
T  40187793 ttactatttatataaaagaggtaataaattaattttctatattcgggacgagtttgggtatga 40187731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 440
Target Start/End: Complemental strand, 10494327 - 10494245
Alignment:
Q  358 tacctgctgacactccgacgctcaaatcagtattgaatgagaatgggggtagagagaattaagagattctaatattggggact 440  Q
    ||||||| |||||||||||||| || |||||||||| | |||| |||||| |||||| | |  |||||||||  |||||||||    
T  10494327 tacctgcagacactccgacgcttaagtcagtattgactcagaaagggggttgagagagtaagaagattctaaccttggggact 10494245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 15394239 - 15394273
Alignment:
Q  267 ttgatcgtacctgatcagaaggtgactaccgacgc 301  Q
    |||||||||| ||||||||||||||||||||||||    
T  15394239 ttgatcgtacttgatcagaaggtgactaccgacgc 15394273  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 17153092 - 17153182
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatata-aaaggataataagttgactttttacattcatgatgagtttgggtatg 179  Q
    |||||||||||||| ||||||| ||| ||||||||||||| || || || |||||| |||| ||| |||||||  || | |||||||||||    
T  17153092 tgtgtgagtgaaattatttaggttttggatttctatttatctagaaggggtaataaattgattttctacattcgggacgggtttgggtatg 17153182  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 382
Target Start/End: Complemental strand, 31477619 - 31477585
Alignment:
Q  348 gggggttgtgtacctgctgacactccgacgctcaa 382  Q
    ||||||||||||||||| |||||||||||||||||    
T  31477619 gggggttgtgtacctgcagacactccgacgctcaa 31477585  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 7350571 - 7350518
Alignment:
Q  92 tgtgagtgaaatgatttaggatttagatttctatttatataaaag-gataataa 144  Q
    ||||||| |||||||||||| ||| |||| ||||||||||||||| ||||||||    
T  7350571 tgtgagtaaaatgatttagggtttcgattactatttatataaaagcgataataa 7350518  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 6557965 - 6557871
Alignment:
Q  18 agggtgtcagatgtgaaatgagaagagagagaactaaaagaagtgggtatcgtctgatagattgagac--tcattgtgtgagtgaaatgatttag 110  Q
    ||||||| ||||||| || |||||||||||||||| | ||||||| || || ||||| ||| ||||||  | |||||||||||||||||||||||    
T  6557965 agggtgtgagatgtggaaggagaagagagagaacttagagaagtgagtgtcatctgaaagactgagactttgattgtgtgagtgaaatgatttag 6557871  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 11472874 - 11472817
Alignment:
Q  93 gtgagtgaaatgatttaggatttagatttctatttatataaaagg-ataataagttga 149  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||| ||||||| ||||    
T  11472874 gtgagtgaaatgatttagggttttggtttctatttatataaaaggtataataaattga 11472817  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 30999906 - 30999957
Alignment:
Q  85 ctcattgtgtgagtgaaatgatttaggatttagatttctatttatataaaag 136  Q
    ||||||||| || |||||| || |||||||| ||||||||||||||||||||    
T  30999906 ctcattgtgcgaatgaaattatgtaggatttggatttctatttatataaaag 30999957  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 32053874 - 32053952
Alignment:
Q  366 gacactccgacgctcaaatcagtattgaatgagaatggggg-tagagagaattaagagattctaatattggggactgct 443  Q
    |||||||||||| |||| | |||||||| ||||| |||||| ||| |||| ||||||||||||||  ||||| ||||||    
T  32053874 gacactccgacgttcaagttagtattgagtgagagtggggggtagtgagagttaagagattctaactttgggcactgct 32053952  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 17845623 - 17845466
Alignment:
Q  18 agggtgtcagatgtgaaatgagaagagagagaactaaaagaagtgggtatcgtctgatagattgagactcattgtgtgagtgaaatgatttaggatttag 117  Q
    ||||||| | ||||| || |||| |||| |||||| | ||||||| || |||||||| |||||||||      ||||||||||||||||||||| ||| |    
T  17845623 agggtgtgaaatgtggaaggagacgagaaagaacttatagaagtgagtgtcgtctgaaagattgaga------gtgtgagtgaaatgatttagg-tttgg 17845531  T
Q  118 a-tttctatttatat-aaaaggataataagttga-ctttttacattcatgatgagtttgggtatg 179  Q
    | ||||||||||||| ||||||||||||| ||||  |||||||||||  || | |||||||||||    
T  17845530 agtttctatttatataaaaaggataataaattgatttttttacattcgagacgggtttgggtatg 17845466  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 13531871 - 13531943
Alignment:
Q  88 attgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacat 159  Q
    |||||||||||||||||||||||| |||   ||||||||||||||||| ||||||||| |||| ||| |||||    
T  13531871 attgtgtgagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttctacat 13531943  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 30696848 - 30696919
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacatt 160  Q
    ||||||||||| |||||||||| |||  |||||||||||||||||| || |||||| |||| ||||||||||    
T  30696848 tgtgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgattttttacatt 30696919  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 11958975 - 11959030
Alignment:
Q  126 ttatataaaag-gataataagttgactttttacattcatgatgagtttgggtatga 180  Q
    ||||||||||| | |||||| |||| ||| ||||||||||||||||||||||||||    
T  11958975 ttatataaaagaggtaataaattgattttatacattcatgatgagtttgggtatga 11959030  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 35248546 - 35248499
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaagg 137  Q
    |||||||||||||||||||||| |||   |||||||||||||||||||    
T  35248546 tgtgtgagtgaaatgatttagggtttcattttctatttatataaaagg 35248499  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 19092675 - 19092716
Alignment:
Q  348 gggggttgtgtacctgctgacactccgacgctcaaatcagta 389  Q
    ||||||||||||||||| |||||||| |||||||| ||||||    
T  19092675 gggggttgtgtacctgcagacactccaacgctcaagtcagta 19092716  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 25210301 - 25210346
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa 135  Q
    |||||||||||||||||||||| |||   |||||||||||||||||    
T  25210301 tgtgtgagtgaaatgatttagggtttgagtttctatttatataaaa 25210346  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 296
Target Start/End: Original strand, 45279205 - 45279233
Alignment:
Q  268 tgatcgtacctgatcagaaggtgactacc 296  Q
    |||||||||||||||||||||||||||||    
T  45279205 tgatcgtacctgatcagaaggtgactacc 45279233  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 296
Target Start/End: Original strand, 45286604 - 45286632
Alignment:
Q  268 tgatcgtacctgatcagaaggtgactacc 296  Q
    |||||||||||||||||||||||||||||    
T  45286604 tgatcgtacctgatcagaaggtgactacc 45286632  T

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Target: scaffold0244 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 4745 - 4698
Alignment:
Q  90 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaagg 137  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||    
T  4745 tgtgtgagtgaaatgatttagagttttgatttctatttatataaaagg 4698  T

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Target: scaffold0158 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 27329 - 27404
Alignment:
Q  354 tgtgtacctgctgacactccgacgctcaaatcagtattgaatgagaatgggggtagagagaattaagagattctaa 429  Q
    |||||||||||  ||| ||||||||||||||||||||| | | |||| ||| || |||||| ||||||||||||||    
T  27329 tgtgtacctgcaaacattccgacgctcaaatcagtattcagttagaaagggtgttgagagagttaagagattctaa 27404  T

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Target: scaffold1322 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 1037 - 1120
Alignment:
Q  93 gtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattcatgatgagtttggg 175  Q
    ||||||||||||||||| |||||   ||||||||||||||||| || |||||| || | ||| ||||||||||| | |||||||    
T  1037 gtgagtgaaatgatttaagatttgagtttctatttatataaaatgggtaataaattaattttctacattcatgacgggtttggg 1120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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