View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_16 (Length: 445)

Name: NF17080_low_16
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_16
NF17080_low_16
[»] chr8 (8 HSPs)
chr8 (77-404)||(27968833-27969160)
chr8 (115-404)||(27980423-27980716)
chr8 (115-404)||(28037725-28038018)
chr8 (78-338)||(27886906-27887172)
chr8 (78-338)||(27945564-27945830)
chr8 (78-338)||(28025807-28026073)
chr8 (295-378)||(16895583-16895666)
chr8 (363-410)||(27873584-27873631)
[»] chr7 (2 HSPs)
chr7 (13-76)||(6951869-6951932)
chr7 (13-76)||(12332803-12332866)
[»] chr4 (1 HSPs)
chr4 (13-76)||(18186157-18186220)
[»] chr3 (4 HSPs)
chr3 (13-76)||(13242709-13242772)
chr3 (350-410)||(54431151-54431211)
chr3 (113-149)||(54431294-54431330)
chr3 (348-378)||(52401416-52401446)
[»] chr5 (2 HSPs)
chr5 (13-76)||(12594193-12594256)
chr5 (13-76)||(39507968-39508031)
[»] chr1 (1 HSPs)
chr1 (295-378)||(15809360-15809443)


Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 77 - 404
Target Start/End: Complemental strand, 27969160 - 27968833
Alignment:
Q  77 ctttccgtcaatctgactgacatattatannnnnnnacccattgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaacc 176  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||       || |||||||||||||||||    
T  27969160 ctttccgtcaatctgactgacatattatatttttttacccattgacattcacccaggaaaaacaatggttgttagaaaaatagcttgtggggacgaaacc 27969061  T
Q  177 aaatggtgcatgagaaattgtagaaaaattgaatctgttatcaattatttaccaccacaaacaattatggatttcaattaataagcctagtatacattca 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27969060 aaatggtgcatgagaaattgtagaaaaattgaatctgttatcaattatttaccaccacaaacaattatggatttcaattaataagcctagtatacattca 27968961  T
Q  277 aaaccactacaattcaaaggtcaaacaaatcaacaattttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcatgattgaatggagtttgc 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27968960 aaaccactacaattcaaaggtcaaacaaatcaacaattttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcataattgaatggagtttgc 27968861  T
Q  377 agcgcaggagctctttagaacgaaggac 404  Q
    ||||||||||||||||||||||||||||    
T  27968860 agcgcaggagctctttagaacgaaggac 27968833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 115 - 404
Target Start/End: Complemental strand, 27980716 - 27980423
Alignment:
Q  115 ccattgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaatctgt 214  Q
    ||||||||||||||| |||||||||||||||||||       || ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |    
T  27980716 ccattgacattcacctaggaaaaacaatggttgttagaaaactagcttgtggggacgaaaccaaatggtgaatgagaaagtgtagaaaaattgaatctct 27980617  T
Q  215 tatcaattatttaccaccac-aaacaattatggatttcaattaataagcctagtatacattcaaaaccactacaa---ttcaaaggtcaaacaaatcaac 310  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||| ||||    
T  27980616 tatcaattatttaccaccaccaaacaattatggatttcaattaataagcctagtatacattcaaaaccgctacaaagtttcaaaggtcaaacaaagcaac 27980517  T
Q  311 aattttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcagcgcaggagctctttagaacgaaggac 404  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27980516 acttttaaaagtttaagtcttcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcagcgcaggagctctttagaacgaaggac 27980423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 115 - 404
Target Start/End: Complemental strand, 28038018 - 28037725
Alignment:
Q  115 ccattgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaatctgt 214  Q
    ||||||||||||||| |||||||||||||||||||       || ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |    
T  28038018 ccattgacattcacctaggaaaaacaatggttgttagaaaactagcttgtggggacgaaaccaaatggtgaatgagaaagtgtagaaaaattgaatctct 28037919  T
Q  215 tatcaattatttaccaccac-aaacaattatggatttcaattaataagcctagtatacattcaaaaccactacaa---ttcaaaggtcaaacaaatcaac 310  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||| ||||    
T  28037918 tatcaattatttaccaccaccaaacaattatggatttcaattaataagcctagtatacattcaaaaccgctacaaagtttcaaaggtcaaacaaagcaac 28037819  T
Q  311 aattttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcagcgcaggagctctttagaacgaaggac 404  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28037818 acttttaaaagtttaagtcttcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcagcgcaggagctctttagaacgaaggac 28037725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 78 - 338
Target Start/End: Complemental strand, 27887172 - 27886906
Alignment:
Q  78 tttccgtcaatctgactgacatattatannnnnnnacccattgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaacca 177  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  27887172 tttccgtcaatctgactgacatattataattttttacccattgacattcacccaggaaaaacaatggttgttaaaaaaataacttgtggggacgaaacca 27887073  T
Q  178 aatggtgcatgagaaattgtagaaaaattgaatctgttatcaattatttacca---ccacaaacaattatggatttcaattaataagcctagtatacatt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||||    
T  27887072 aatggtgcatgagaaattgtagaaaaattgaatctgttatcaattatttaccaccaccacaaacaattgtggatttcaattaataagcctagtatacatt 27886973  T
Q  275 caaaaccactacaa---ttcaaaggtcaaacaaatcaacaattttaaaagtttaagtctgcaagaga 338  Q
    ||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  27886972 caaaaccactacaaagtttcaaaggtcaaacaaatcaacacttttaaaagtttaagtcttcaagaga 27886906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 78 - 338
Target Start/End: Complemental strand, 27945830 - 27945564
Alignment:
Q  78 tttccgtcaatctgactgacatattatannnnnnnacccattgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaacca 177  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  27945830 tttccgtcaatctgactgacatattataattttttacccattgacattcacccaggaaaaacaatggttgttaaaaaaataacttgtggggacgaaacca 27945731  T
Q  178 aatggtgcatgagaaattgtagaaaaattgaatctgttatcaattatttacca---ccacaaacaattatggatttcaattaataagcctagtatacatt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||||    
T  27945730 aatggtgcatgagaaattgtagaaaaattgaatctgttatcaattatttaccaccaccacaaacaattgtggatttcaattaataagcctagtatacatt 27945631  T
Q  275 caaaaccactacaa---ttcaaaggtcaaacaaatcaacaattttaaaagtttaagtctgcaagaga 338  Q
    ||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  27945630 caaaaccactacaaagtttcaaaggtcaaacaaatcaacacttttaaaagtttaagtcttcaagaga 27945564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 78 - 338
Target Start/End: Complemental strand, 28026073 - 28025807
Alignment:
Q  78 tttccgtcaatctgactgacatattatannnnnnnacccattgacattcacccaggaaaaacaatggttgttnnnnnnntaacttgtggggacgaaacca 177  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  28026073 tttccgtcaatctgactgacatattataattttttacccattgacattcacccaggaaaaacaatggttgttaaaaaaataacttgtggggacgaaacca 28025974  T
Q  178 aatggtgcatgagaaattgtagaaaaattgaatctgttatcaattatttacca---ccacaaacaattatggatttcaattaataagcctagtatacatt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||||    
T  28025973 aatggtgcatgagaaattgtagaaaaattgaatctgttatcaattatttaccaccaccacaaacaattgtggatttcaattaataagcctagtatacatt 28025874  T
Q  275 caaaaccactacaa---ttcaaaggtcaaacaaatcaacaattttaaaagtttaagtctgcaagaga 338  Q
    ||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  28025873 caaaaccactacaaagtttcaaaggtcaaacaaatcaacacttttaaaagtttaagtcttcaagaga 28025807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 378
Target Start/End: Complemental strand, 16895666 - 16895583
Alignment:
Q  295 ggtcaaacaaatcaacaattttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcag 378  Q
    ||||||| |||| ||| |||||||||||||||||   |||||||||| | || |||||||||||||||||||||||||||||||    
T  16895666 ggtcaaagaaataaaccattttaaaagtttaagttatcaagagaaagaagatgtggggtaatcatgattgaatggagtttgcag 16895583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 27873631 - 27873584
Alignment:
Q  363 tgaatggagtttgcagcgcaggagctctttagaacgaaggacgaagga 410  Q
    ||||||||||||||| || ||||||||||||||||||||||| |||||    
T  27873631 tgaatggagtttgcaccgtaggagctctttagaacgaaggaccaagga 27873584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 6951932 - 6951869
Alignment:
Q  13 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951932 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaa 6951869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 12332803 - 12332866
Alignment:
Q  13 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12332803 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaa 12332866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 18186157 - 18186220
Alignment:
Q  13 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186157 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaa 18186220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 13242772 - 13242709
Alignment:
Q  13 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242772 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaa 13242709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 350 - 410
Target Start/End: Complemental strand, 54431211 - 54431151
Alignment:
Q  350 gggtaatcatgattgaatggagtttgcagcgcaggagctctttagaacgaaggacgaagga 410  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  54431211 gggtaaccatgattgaatggagtttgcagtgcaggagctctttagaacgaaggaccaagga 54431151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 54431330 - 54431294
Alignment:
Q  113 acccattgacattcacccaggaaaaacaatggttgtt 149  Q
    |||||||||||||||||||||||||||||||||||||    
T  54431330 acccattgacattcacccaggaaaaacaatggttgtt 54431294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 378
Target Start/End: Complemental strand, 52401446 - 52401416
Alignment:
Q  348 tggggtaatcatgattgaatggagtttgcag 378  Q
    |||||||||||||||||||||||||||||||    
T  52401446 tggggtaatcatgattgaatggagtttgcag 52401416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 12594256 - 12594193
Alignment:
Q  13 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaa 76  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12594256 aatataccagattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaa 12594193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 39508031 - 39507968
Alignment:
Q  13 aatataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattagattaa 76  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  39508031 aatataccggattcttattaatttttagtcgatttgaattgaaattttcaaattattaaattaa 39507968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 378
Target Start/End: Original strand, 15809360 - 15809443
Alignment:
Q  295 ggtcaaacaaatcaacaattttaaaagtttaagtctgcaagagaaaggaaatttggggtaatcatgattgaatggagtttgcag 378  Q
    ||||||| |||| ||| |||||||||||||||||   |||||||||| | || |||||||||||||||||||||||||||||||    
T  15809360 ggtcaaagaaataaaccattttaaaagtttaagttatcaagagaaagaagatgtggggtaatcatgattgaatggagtttgcag 15809443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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