View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_17 (Length: 440)
Name: NF17080_low_17
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 220 - 384
Target Start/End: Complemental strand, 2833017 - 2832849
Alignment:
| Q |
220 |
cttctggtaacatactaaca---tagtgaggca-cagatctggtttctggaatatacatcttcctatcatcatctatcaatcaataataaaataacgtaa |
315 |
Q |
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| T |
2833017 |
cttctggtaaaatactaacaacatagtgaggcaacagatctggtttctggaatatacatcttcctatcattatctatcaatcaataataaaataacgtaa |
2832918 |
T |
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| Q |
316 |
catctttgttatcataaccctgactgacatacgtgcattgtcttctgtttccattcacattggcggctc |
384 |
Q |
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| T |
2832917 |
catctttgttatcataaccctgactgacatacgtgcattttcttctgtttccattcacattggcggctc |
2832849 |
T |
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Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 2833226 - 2833085
Alignment:
| Q |
11 |
ccaagaatatagaagaacaatggaaacaaataaagggtagaagagaagttttgatatcatcacctaaataaagttagagagaatgaaaggcaagtctggt |
110 |
Q |
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| T |
2833226 |
ccaagaatatagaagaacaatggaaacaaataaagggtagaagagaagtattgatatattcacctaaatagagttagagagaatgaaaggcaagtctggt |
2833127 |
T |
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| Q |
111 |
ttgaagaattaatcatttgatgtcgtttcatatgaaaatgag |
152 |
Q |
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| T |
2833126 |
ttgaagaattaatcatttgatgtcgtttcatatgaaaatgag |
2833085 |
T |
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