View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_18 (Length: 439)
Name: NF17080_low_18
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 6 - 423
Target Start/End: Original strand, 49271669 - 49272086
Alignment:
| Q |
6 |
aggagcacagagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaaca |
105 |
Q |
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| T |
49271669 |
aggagcacaaagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaatcttgaacttgctaaca |
49271768 |
T |
|
| Q |
106 |
agatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaatag |
205 |
Q |
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| T |
49271769 |
agatccccagctgcaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttttggttcattgcaaggactacccagaatag |
49271868 |
T |
|
| Q |
206 |
gaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatc |
305 |
Q |
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| T |
49271869 |
gaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatc |
49271968 |
T |
|
| Q |
306 |
aagagggcatgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaagagggtta |
405 |
Q |
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| T |
49271969 |
aagagggcatgttttgtttcttgtgtgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaagagggtta |
49272068 |
T |
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| Q |
406 |
ccttgtttgtctactact |
423 |
Q |
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| T |
49272069 |
ccttgtttgtctactact |
49272086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 6 - 423
Target Start/End: Original strand, 49277586 - 49278009
Alignment:
| Q |
6 |
aggagcacagagaacaccaggaacagagggacagaacttaaagctatatatctcataagcatgttcacctgcaagcctctcaattttgaacttgctaaca |
105 |
Q |
| |
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||||||||| ||| |||||||||||| |||||| || ||||||||| ||||||||||||||||| || ||||||||||||| || |||| ||||| | |
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| T |
49277586 |
aggagcacaaagagtaccaggaacagaaggacagtacagaaagctataaatctcataagcatgttctccctcaagcctctcaatcttaaactggctaaaa |
49277685 |
T |
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| Q |
106 |
agatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaa------cctttaaaagcctccacacttttggttcattgcaaggactaccca |
199 |
Q |
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| T |
49277686 |
aggttcccaggaaaaccaccggtgctcacaaaccaaaacctagctctagttccctcttttgaaatcttccacacttttctctcactgcaaggactaccca |
49277785 |
T |
|
| Q |
200 |
gaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggat |
299 |
Q |
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| T |
49277786 |
atattggaatctcaacggtgagatcagtgagagttggaatgtaatcatgttcatattcatagaaataaactggcgagccaatggcttcagggttacggat |
49277885 |
T |
|
| Q |
300 |
tacatcaagagggcatgttttgtttcttgtatgtcctaatgtaatgcctccattgtcggcccaaagtggaaatacgtagtaaccttcacctggtttaaga |
399 |
Q |
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| T |
49277886 |
aacatcaagagggcatgttttgtttcttgtttgtcctaatgttatgcctccattgtcagcccaaagtggaaatacgtagtaaccttcacctggtttaaga |
49277985 |
T |
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| Q |
400 |
gggttaccttgtttgtctactact |
423 |
Q |
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| T |
49277986 |
gggttaccttgtttgtctactact |
49278009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 329
Target Start/End: Original strand, 49269292 - 49269544
Alignment:
| Q |
77 |
caagcctctcaattttgaacttgctaacaagatccccagctgtaccaccagtgctcacaaaccaaaacccagacccaacctttaaaagcctccacacttt |
176 |
Q |
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||||| ||||||| |||||||| ||||||| |||||||||| |||||||||||||| |||||| |||||||| || | ||| ||||| || ||||||| |
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| T |
49269292 |
caagcttctcaatcttgaacttactaacaacatccccagctacaccaccagtgctcaaaaaccagaacccagatccctcttttgaaagcttcaacacttt |
49269391 |
T |
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| Q |
177 |
tggttcattgcaaggactacccagaataggaatctcaatggtgaggtcagtgagagttggaatgtaatcaagacctgatgcagagaaatacaccggtgtg |
276 |
Q |
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|| | ||||| | ||||| | || |||| | ||||| || ||||| |||||||||||| | || ||||| ||||||||| ||||| || | | |
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| T |
49269392 |
tgactggttgcatgaactactcctaaatcgaattttaatggaaagatcagtttgagttggaatgtgtttaaaacctggtgcagagaagtacactggcgag |
49269491 |
T |
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| Q |
277 |
ccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgt |
329 |
Q |
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| T |
49269492 |
ccgagttctttagggttacgaattacatcaagaggacatgttttgtttcttgt |
49269544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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