View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_19 (Length: 435)
Name: NF17080_low_19
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 9e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 7707183 - 7707382
Alignment:
| Q |
16 |
gttctttctctaggcctaagcaatcatgctacaaaagacattgttctttattacatttgagacgagacaaaga--tcatctttttggttatannnnnnnn |
113 |
Q |
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| T |
7707183 |
gttctttctctaggcctaagcaatcatgctacaaaagacattgttctttattacatttgagacgagacaaagagatcatctttttggttatatttttttt |
7707282 |
T |
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| Q |
114 |
n--gttgagagaattatgttctatattaacttctttagaaaaatagaaacacaaatatacaaatttcaaattacacaatgttatcaataatgtacattta |
211 |
Q |
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| T |
7707283 |
tttgttgagagaattatgttctatattaacttctttagaaaaatagaaacacaaatatacaaatttcaaattacacaatgttatcaataatgtacattta |
7707382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 229 - 426
Target Start/End: Original strand, 7707366 - 7707564
Alignment:
| Q |
229 |
tcaataatgtacatttaaaacggttttgtaaatacaactcactgaattcacaatactattcttctgcatactgta-tcttcttttttagtattgtcgtta |
327 |
Q |
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| T |
7707366 |
tcaataatgtacatttaaaacggttttgtaaatacaactcactgaatccacaatactattcttctacgtactgtattttttttttttagtattattgtta |
7707465 |
T |
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| Q |
328 |
acaacatattgaaacaagnnnnnnnntacttttaaaatatttattctctttccgtcaagtagtctagtgactaaattttacctttaataagagtataat |
426 |
Q |
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| T |
7707466 |
acaacattttgaaacaagaaaaaaaatacttttaaaatatttattctctttccgtcaagtagtctagtgactaaattttaccctaaataggagtataat |
7707564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 7703378 - 7703576
Alignment:
| Q |
18 |
tctttctctaggcctaagcaatcatgctacaaaagacattgttctttattacatttgagacgagacaaa--gatcatctttttggttatannnnnnnnng |
115 |
Q |
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| T |
7703378 |
tctttctttaggcctaagcaatcatgccacaaaagtcgctgttttacataacatttgagaccaaacaaaaagatcacatttttggttataacattttttg |
7703477 |
T |
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| Q |
116 |
ttgagagaattatgttctatattaacttcttt--agaaaaatagaaacacaaatatacaaattt-caaattacacaatgttatcaataatgtacattta |
211 |
Q |
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| T |
7703478 |
tgaagagaattttgttctattttaacttatttttaaaaaaatagaaacccaaacatacaaattttcaaattacacaatattatcaataatgtacattta |
7703576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 7703560 - 7703622
Alignment:
| Q |
229 |
tcaataatgtacatttaaaacggttttgtaaatacaactcactgaattcacaatactattcttct |
293 |
Q |
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| T |
7703560 |
tcaataatgtacatttaaaacggtcttgtaagtagagctcattgaat--ccaatactattcttct |
7703622 |
T |
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