View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_2 (Length: 794)
Name: NF17080_low_2
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 291 - 760
Target Start/End: Original strand, 28536380 - 28536849
Alignment:
| Q |
291 |
attcatgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaatccatttcatcagtataaagtaatgctctgaaatttcaaa |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28536380 |
attcatgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaattcatttcatcagtataaagtaatgctctgaaatttcaaa |
28536479 |
T |
|
| Q |
391 |
accaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgaggttgagcgtgcgaagaaagcaagaaggaagaacgacacaaaaa |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28536480 |
accaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgacgttgagcgtgcgaagaacgcaagaaggaagaacgacacaaaaa |
28536579 |
T |
|
| Q |
491 |
gtttgtagatgtcatatagtactttcattctcctcaacacaatgaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaaacatta |
590 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536580 |
gtttgtagatgtcatatagtactttcattctcctcaacacaataaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaaacatta |
28536679 |
T |
|
| Q |
591 |
cgtgtttcgaaactcgatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaaacca |
690 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536680 |
cgtgtttcgaaactggatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaaacca |
28536779 |
T |
|
| Q |
691 |
aattcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
760 |
Q |
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| T |
28536780 |
aattcctgtatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
28536849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 31 - 291
Target Start/End: Original strand, 28536057 - 28536317
Alignment:
| Q |
31 |
acacattaaaacattgcagtctataacagcaacagaattgtggtcaggcaaataagattctatccaaacaatgtctaggacttaacagagagtatatatt |
130 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536057 |
acacattaaaacattgcagtctataacagcaacagaattgtggtcaggcaaataagattctatccaaacaatgtctaggacttaacagagagtatatatt |
28536156 |
T |
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| Q |
131 |
gaacatctgtactagaccaggcagctaccttgcaaatacatgctagactactaaccgaacataccataaagaaataaatgtagttttgaagattaaagca |
230 |
Q |
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| T |
28536157 |
gaacagctgtactagaccaggcagctaccttgcaaatacatgttagactactaaccgaacataccataaagaaataaatgtagttttgaagattaaagca |
28536256 |
T |
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| Q |
231 |
gccacataggtgcaaaatgtgggggaatgcattctctcaattgtaatttaacacgaggata |
291 |
Q |
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| T |
28536257 |
gccacataggtgcaaaatgtgggggaatggattctctcaattgtaatttaacacgaggata |
28536317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 694 - 794
Target Start/End: Original strand, 28536833 - 28536933
Alignment:
| Q |
694 |
tcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
793 |
Q |
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|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536833 |
tcctgtatattaatcattgatgaaaaaataaaaggtgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
28536932 |
T |
|
| Q |
794 |
c |
794 |
Q |
| |
|
| |
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|
| T |
28536933 |
c |
28536933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 54492190 - 54492156
Alignment:
| Q |
312 |
acactttaccttctcatgtgtaaattacacatgag |
346 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
54492190 |
acactttaccttctcatgtgaaaattacacatgag |
54492156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 17429217 - 17429155
Alignment:
| Q |
296 |
tgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaatccatttc |
358 |
Q |
| |
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|||||||| | |||| |||||||| ||||||| |||||||||||||||| ||||||||||| |
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| T |
17429217 |
tgaatggtaagagatcacactttagtatctcatgagtaaattacacatgagagaatccatttc |
17429155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 42971584 - 42971534
Alignment:
| Q |
297 |
gaatggtgaaagatgacactttacct-tctcatgtgtaaattacacatgag |
346 |
Q |
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||||||||| |||||||||||||||| |||||||| |||||||||||||| |
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| T |
42971584 |
gaatggtgagagatgacactttacctctctcatgtaaaaattacacatgag |
42971534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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