View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_20 (Length: 423)
Name: NF17080_low_20
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 33 - 408
Target Start/End: Original strand, 47294415 - 47294790
Alignment:
| Q |
33 |
caaaattacagtttcatatgannnnnnncaaactcaccgcaattctaaacatggaatttatccaagacacattagccaattagcaaaaccgtaatggagg |
132 |
Q |
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| T |
47294415 |
caaaattacagtttcatatgatttttttcaaactcaccgcaattctaaacatggaatttatccaagacacattagccaattagcaaaaccgtaatggagg |
47294514 |
T |
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| Q |
133 |
gggaaaaactacacagttagcaccgtggtaacttgaaataaaagttaccgagaaaaagaacttgtatggagttattaaatcgataaaaggtaaagccaat |
232 |
Q |
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| T |
47294515 |
gggaaaaactacacaattagcaccatggtaacttgaaatagaagttacggagaaaaagaacttgtatggagttattaaatcgataaaaggtaaagccaat |
47294614 |
T |
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| Q |
233 |
caagtttgtgattgactagtaattactagcttataatattctatnnnnnnngacattttgttattaattgagcataatagccaatataccaaattgaaat |
332 |
Q |
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| T |
47294615 |
caagtttgtgattgactagtaattactagcttataatattctataaaaaaagacattttgttattaattgagcataatagccaatataccaaattgaaat |
47294714 |
T |
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| Q |
333 |
tcccaaatagagtggtgaacctttcagtgacttggtagatgttggaaggcattcgtgacatttgcatggttgataa |
408 |
Q |
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| T |
47294715 |
tcccaaatagagtggtgaacctgtcagtgacttggtagatgttggaaggcattcgtgacatttgcatggttgataa |
47294790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 56044691 - 56044767
Alignment:
| Q |
185 |
aaaaagaacttgtatggagttattaaatcgataaaaggtaaagccaatcaagtttgtgattgactagtaattactag |
261 |
Q |
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| T |
56044691 |
aaaaagaacttgtatggagtagttaaatcaataaaagataacgccaatgaagtttgtgattgattagtaattactag |
56044767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 55707810 - 55707875
Alignment:
| Q |
342 |
gagtggtgaacctttcagtgacttggtagatgttggaaggcattcgtgacatttgcatggttgata |
407 |
Q |
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| T |
55707810 |
gagtggtgaacctttcagttgctttgtggttgttggatggcattcatgacatttgcatggatgata |
55707875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 408
Target Start/End: Original strand, 56046514 - 56046580
Alignment:
| Q |
342 |
gagtggtgaacctttcagtgacttggtagatgttggaaggcattcgtgacatttgcatggttgataa |
408 |
Q |
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| T |
56046514 |
gagtggtgaacctttcggtggcttggtggatgttggatagcattaaggacatttgcatggatgataa |
56046580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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