View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_23 (Length: 403)

Name: NF17080_low_23
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_23
NF17080_low_23
[»] chr8 (39 HSPs)
chr8 (37-173)||(20876987-20877125)
chr8 (33-174)||(20875692-20875835)
chr8 (38-87)||(1949651-1949700)
chr8 (40-171)||(39888482-39888617)
chr8 (37-87)||(14820624-14820674)
chr8 (37-87)||(21147934-21147984)
chr8 (36-174)||(8105993-8106133)
chr8 (39-82)||(1950028-1950071)
chr8 (37-87)||(10108368-10108418)
chr8 (37-87)||(10108700-10108750)
chr8 (37-87)||(38726685-38726735)
chr8 (104-174)||(38727974-38728044)
chr8 (38-87)||(5554868-5554917)
chr8 (38-87)||(35367409-35367458)
chr8 (35-87)||(5555199-5555251)
chr8 (39-87)||(14820295-14820343)
chr8 (39-87)||(18044157-18044205)
chr8 (102-174)||(39889601-39889673)
chr8 (39-87)||(43851665-43851713)
chr8 (37-87)||(7689853-7689903)
chr8 (33-87)||(26136679-26136733)
chr8 (33-87)||(43481645-43481699)
chr8 (38-87)||(10171473-10171522)
chr8 (102-171)||(28977686-28977755)
chr8 (103-164)||(28978728-28978789)
chr8 (38-87)||(40487744-40487793)
chr8 (36-87)||(21148266-21148317)
chr8 (37-72)||(28977617-28977652)
chr8 (37-87)||(30789837-30789887)
chr8 (37-87)||(40486627-40486677)
chr8 (33-87)||(42113311-42113365)
chr8 (38-87)||(7689523-7689572)
chr8 (38-87)||(42606083-42606132)
chr8 (42-86)||(28978809-28978853)
chr8 (103-171)||(38726755-38726823)
chr8 (103-151)||(40486696-40486744)
chr8 (37-85)||(41820932-41820980)
chr8 (47-87)||(42112993-42113033)
chr8 (42-86)||(44162666-44162710)
[»] chr5 (30 HSPs)
chr5 (32-174)||(28070459-28070603)
chr5 (103-187)||(41424584-41424668)
chr5 (36-87)||(28071828-28071879)
chr5 (32-87)||(29445135-29445190)
chr5 (37-87)||(14143900-14143950)
chr5 (37-87)||(17762281-17762331)
chr5 (38-87)||(14411696-14411745)
chr5 (39-87)||(23979231-23979279)
chr5 (38-85)||(41424515-41424562)
chr5 (103-173)||(32233967-32234037)
chr5 (34-87)||(6817118-6817171)
chr5 (38-87)||(7126247-7126296)
chr5 (38-87)||(24651029-24651078)
chr5 (38-87)||(24837168-24837217)
chr5 (38-79)||(41425790-41425831)
chr5 (39-87)||(24837499-24837547)
chr5 (33-85)||(31799634-31799686)
chr5 (103-187)||(41425677-41425761)
chr5 (42-142)||(7125921-7126024)
chr5 (44-87)||(31799969-31800012)
chr5 (44-87)||(41001682-41001725)
chr5 (33-87)||(20709541-20709595)
chr5 (37-87)||(27158989-27159039)
chr5 (104-174)||(28071736-28071806)
chr5 (38-87)||(14144231-14144280)
chr5 (38-87)||(17762612-17762661)
chr5 (38-87)||(24074302-24074351)
chr5 (39-87)||(18336786-18336833)
chr5 (43-87)||(27159284-27159328)
chr5 (102-142)||(41001624-41001664)
[»] chr4 (36 HSPs)
chr4 (37-174)||(36887678-36887819)
chr4 (39-174)||(43313451-43313589)
chr4 (37-174)||(53896444-53896584)
chr4 (38-174)||(20069539-20069677)
chr4 (103-182)||(31082252-31082331)
chr4 (36-173)||(46935080-46935220)
chr4 (103-174)||(50462635-50462706)
chr4 (37-87)||(18667620-18667670)
chr4 (38-80)||(50462733-50462775)
chr4 (102-151)||(12904813-12904862)
chr4 (38-87)||(31218311-31218360)
chr4 (42-87)||(48580196-48580241)
chr4 (35-87)||(9619309-9619361)
chr4 (39-87)||(15640716-15640764)
chr4 (49-171)||(51029020-51029141)
chr4 (44-87)||(3018016-3018059)
chr4 (36-174)||(36888919-36889059)
chr4 (37-87)||(41946963-41947013)
chr4 (37-87)||(48259821-48259871)
chr4 (34-87)||(46046754-46046806)
chr4 (44-87)||(9516615-9516658)
chr4 (51-86)||(31083428-31083463)
chr4 (36-87)||(37013036-37013087)
chr4 (49-87)||(31943959-31943997)
chr4 (38-87)||(3018340-3018389)
chr4 (38-87)||(3273620-3273669)
chr4 (42-87)||(4356210-4356255)
chr4 (38-87)||(9397028-9397077)
chr4 (38-87)||(46046429-46046478)
chr4 (38-87)||(46934070-46934119)
chr4 (121-174)||(46934153-46934205)
chr4 (39-87)||(9516940-9516988)
chr4 (39-87)||(26252567-26252615)
chr4 (102-142)||(31083368-31083408)
chr4 (39-87)||(41947184-41947232)
chr4 (35-87)||(48579862-48579914)
[»] chr1 (29 HSPs)
chr1 (34-142)||(17606579-17606689)
chr1 (38-174)||(17500768-17500908)
chr1 (118-174)||(21091868-21091924)
chr1 (38-86)||(27039637-27039685)
chr1 (37-87)||(33629020-33629070)
chr1 (37-87)||(37236716-37236766)
chr1 (40-87)||(42510345-42510392)
chr1 (37-87)||(18462284-18462334)
chr1 (101-174)||(26266481-26266554)
chr1 (34-87)||(43539677-43539730)
chr1 (38-86)||(43400752-43400800)
chr1 (35-78)||(20996006-20996049)
chr1 (39-174)||(17501969-17502107)
chr1 (37-87)||(39711402-39711452)
chr1 (38-87)||(29696564-29696613)
chr1 (38-87)||(33628689-33628738)
chr1 (102-174)||(26271124-26271196)
chr1 (44-87)||(17606309-17606352)
chr1 (39-151)||(42510015-42510130)
chr1 (36-87)||(52058338-52058389)
chr1 (36-86)||(26271216-26271266)
chr1 (34-79)||(4906957-4907002)
chr1 (38-87)||(16294048-16294097)
chr1 (38-87)||(20995697-20995746)
chr1 (39-87)||(18342347-18342395)
chr1 (36-76)||(30299229-30299269)
chr1 (39-87)||(39826376-39826424)
chr1 (103-175)||(43400821-43400893)
chr1 (39-87)||(52058011-52058059)
[»] chr7 (33 HSPs)
chr7 (38-174)||(33131632-33131772)
chr7 (103-174)||(23276236-23276307)
chr7 (35-171)||(33133379-33133518)
chr7 (35-87)||(41600288-41600340)
chr7 (38-174)||(14630335-14630473)
chr7 (37-87)||(28218176-28218226)
chr7 (33-87)||(31852160-31852214)
chr7 (38-87)||(14646980-14647029)
chr7 (38-87)||(20963823-20963872)
chr7 (39-88)||(23704662-23704711)
chr7 (38-87)||(28218493-28218542)
chr7 (1-38)||(37968779-37968816)
chr7 (31-87)||(12006533-12006589)
chr7 (39-174)||(14800895-14801033)
chr7 (39-174)||(15247887-15248025)
chr7 (31-87)||(25772356-25772412)
chr7 (40-86)||(23258255-23258301)
chr7 (114-171)||(23257186-23257243)
chr7 (38-87)||(23704990-23705039)
chr7 (39-87)||(20419536-20419584)
chr7 (39-87)||(20419867-20419915)
chr7 (39-87)||(23274925-23274973)
chr7 (39-87)||(38880051-38880099)
chr7 (38-85)||(20459022-20459069)
chr7 (38-87)||(14795549-14795598)
chr7 (38-87)||(15242541-15242590)
chr7 (39-80)||(38879723-38879764)
chr7 (38-87)||(48672276-48672325)
chr7 (38-87)||(48672609-48672658)
chr7 (102-146)||(10409441-10409485)
chr7 (39-87)||(16995200-16995248)
chr7 (39-79)||(24195210-24195250)
chr7 (39-87)||(41599958-41600006)
[»] chr3 (43 HSPs)
chr3 (36-196)||(3424771-3424936)
chr3 (38-174)||(3425888-3426027)
chr3 (39-142)||(14162142-14162248)
chr3 (39-85)||(5800936-5800982)
chr3 (37-87)||(9266973-9267023)
chr3 (33-87)||(14171916-14171970)
chr3 (37-87)||(14262034-14262084)
chr3 (37-87)||(14262366-14262416)
chr3 (37-87)||(16721989-16722039)
chr3 (37-87)||(35741914-35741964)
chr3 (103-171)||(32997274-32997342)
chr3 (39-87)||(35740817-35740865)
chr3 (38-151)||(36990922-36991038)
chr3 (38-151)||(37016362-37016478)
chr3 (37-142)||(30500041-30500148)
chr3 (36-87)||(30500370-30500421)
chr3 (37-87)||(20853693-20853743)
chr3 (33-87)||(35995672-35995726)
chr3 (37-87)||(45969913-45969963)
chr3 (30-87)||(11003723-11003780)
chr3 (38-87)||(19112763-19112812)
chr3 (42-87)||(27946112-27946157)
chr3 (38-87)||(27946195-27946244)
chr3 (38-87)||(49986526-49986575)
chr3 (39-87)||(19720333-19720381)
chr3 (37-171)||(32998376-32998512)
chr3 (40-79)||(1067715-1067754)
chr3 (36-87)||(45970246-45970297)
chr3 (33-87)||(9267304-9267358)
chr3 (37-87)||(14171585-14171635)
chr3 (33-87)||(16722321-16722375)
chr3 (33-87)||(19113095-19113149)
chr3 (33-87)||(33372400-33372454)
chr3 (37-87)||(35996005-35996055)
chr3 (35-69)||(36989826-36989860)
chr3 (35-69)||(37015266-37015300)
chr3 (34-87)||(14161866-14161919)
chr3 (37-78)||(21632899-21632940)
chr3 (102-151)||(43572653-43572702)
chr3 (38-87)||(49986858-49986907)
chr3 (103-187)||(1067782-1067866)
chr3 (39-87)||(5800605-5800653)
chr3 (102-142)||(38283821-38283861)
[»] chr2 (30 HSPs)
chr2 (34-174)||(30958679-30958822)
chr2 (36-87)||(12419052-12419103)
chr2 (36-87)||(12431112-12431163)
chr2 (37-87)||(30960001-30960051)
chr2 (102-171)||(23046774-23046843)
chr2 (34-87)||(33290377-33290430)
chr2 (102-158)||(21481068-21481124)
chr2 (102-173)||(44098862-44098933)
chr2 (37-87)||(19251469-19251519)
chr2 (38-87)||(13284411-13284460)
chr2 (38-86)||(23046706-23046754)
chr2 (38-86)||(23047913-23047961)
chr2 (39-87)||(23854688-23854736)
chr2 (39-87)||(42670717-42670765)
chr2 (119-174)||(19026480-19026535)
chr2 (36-87)||(22263523-22263574)
chr2 (39-86)||(23855025-23855072)
chr2 (37-87)||(17463421-17463471)
chr2 (37-87)||(17850916-17850966)
chr2 (38-87)||(26236424-26236473)
chr2 (39-87)||(13284743-13284791)
chr2 (39-87)||(17850587-17850635)
chr2 (39-87)||(23806282-23806330)
chr2 (44-87)||(13254766-13254809)
chr2 (33-141)||(19251742-19251853)
chr2 (103-158)||(21482135-21482190)
chr2 (39-86)||(44098953-44099000)
chr2 (38-87)||(33290048-33290097)
chr2 (34-78)||(28416212-28416256)
chr2 (103-187)||(36359111-36359195)
[»] scaffold0117 (1 HSPs)
scaffold0117 (42-87)||(12312-12357)
[»] chr6 (17 HSPs)
chr6 (38-83)||(21070871-21070916)
chr6 (38-87)||(24731934-24731983)
chr6 (39-87)||(9481182-9481230)
chr6 (39-87)||(21069514-21069562)
chr6 (33-87)||(18500309-18500363)
chr6 (37-87)||(32017833-32017883)
chr6 (38-87)||(18500659-18500708)
chr6 (35-87)||(9854215-9854267)
chr6 (39-87)||(15941303-15941351)
chr6 (44-87)||(10321738-10321781)
chr6 (37-80)||(24732274-24732317)
chr6 (44-87)||(26385604-26385647)
chr6 (33-87)||(2299643-2299697)
chr6 (41-87)||(34113595-34113641)
chr6 (50-87)||(33714494-33714531)
chr6 (102-142)||(9481453-9481493)
chr6 (39-87)||(26385278-26385326)
[»] scaffold0449 (1 HSPs)
scaffold0449 (37-87)||(7530-7580)
[»] scaffold0185 (1 HSPs)
scaffold0185 (33-87)||(3863-3917)
[»] scaffold0141 (1 HSPs)
scaffold0141 (33-87)||(8319-8373)
[»] scaffold0361 (2 HSPs)
scaffold0361 (38-87)||(4892-4941)
scaffold0361 (37-87)||(4560-4610)
[»] scaffold0352 (2 HSPs)
scaffold0352 (38-87)||(6009-6058)
scaffold0352 (38-87)||(4666-4715)
[»] scaffold0586 (1 HSPs)
scaffold0586 (39-78)||(5873-5912)
[»] scaffold0809 (2 HSPs)
scaffold0809 (38-87)||(1736-1785)
scaffold0809 (104-152)||(1671-1719)
[»] scaffold0477 (1 HSPs)
scaffold0477 (38-87)||(4879-4928)
[»] scaffold0176 (1 HSPs)
scaffold0176 (38-87)||(15958-16007)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 20877125 - 20876987
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnntatttagattctgtccttatcatttcagattctt 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |         ||| |||||| ||| |||||||||||||||||    
T  20877125 aagggttaatacctcttttggtccctgtaatatgagcgaattccggttttagtccctataaaaaaaagttttgattctatccctatcatttcagattctt 20877026  T
Q  135 ccacttttagtctctcacttaaacttgtcaccagaatct 173  Q
    || ||||||||| ||||||||||||||||| ||||||||    
T  20877025 ccccttttagtccctcacttaaacttgtcagcagaatct 20876987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 20875692 - 20875835
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnntatttagattctgtccttatcatttcagat 130  Q
    |||| |||||||||||||||||||||||||||||||||||| |||| ||||||||  || |||         ||| |||| ||||| ||| |||||||||    
T  20875692 tttttagggttaatacctcttttggtccctgtaatatgagcaaatttcggttttagtccttgtaaaaaaaagtttggattatgtccctattatttcagat 20875791  T
Q  131 tcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||||||||||||||| ||||||||||||||||| || ||||||    
T  20875792 tcttccacttttagtccctcacttaaacttgtcaacaaaatctg 20875835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 1949651 - 1949700
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1949651 agggttaatacctcttttggtccctgtaatatgatcgaattccggtttta 1949700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 171
Target Start/End: Original strand, 39888482 - 39888617
Alignment:
Q  40 ggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnt--atttagattctgtccttatcatttcagattcttc 135  Q
    ||||||||||||||||||||||| |||||| |||||| | ||||||||  ||||||          ||||||||||||||| |||||||| |||||||||    
T  39888482 ggttaatacctcttttggtccctataatataagcgaaattcggttttagtccctgtaaaaataataatttagattctgtccctatcatttgagattcttc 39888581  T
Q  136 cacttttagtctctcacttaaacttgtcaccagaat 171  Q
    | |||||  || ||||||||||||||||| ||||||    
T  39888582 cgcttttgatccctcacttaaacttgtcagcagaat 39888617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 14820674 - 14820624
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  14820674 aagggttaatacctcttttagtccctgtaatattagcgaattccggtttta 14820624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 21147934 - 21147984
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  21147934 aagggttaatacctctttttgtccctgtaatattagcgaattccggtttta 21147984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 8106133 - 8105993
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnntatttagattctgtccttatcatttcagattct 133  Q
    ||||||||||||||||||||||||  || |||||||||||||||| ||||||  |||| |       | ||||||||  |||| |||||||||||||||     
T  8106133 taagggttaatacctcttttggtcattgcaatatgagcgaattccagttttagtccctctaaaaaaatgtttagatttcgtccctatcatttcagattcc 8106034  T
Q  134 tccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||||| ||  || |||||||||||| |||  |||||||||    
T  8106033 tccactattgatccctcacttaaactagtcggcagaatctg 8105993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 1950071 - 1950028
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccgg 82  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  1950071 gggttaatgcctcttttggtccctgtaatatgagcgaattccgg 1950028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 10108368 - 10108418
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  10108368 aagggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 10108418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 10108750 - 10108700
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  10108750 aagggttaatacctcttttcgtccctgtaatattagcaaattccggtttta 10108700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 38726685 - 38726735
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||||    
T  38726685 aagggttaataccctttttggtccctgtaatatgagcaaattccggtttta 38726735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 38728044 - 38727974
Alignment:
Q  104 ttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||||| ||||||| | ||||||||| |||||||||| |||| ||||||||||||||||| || ||||||    
T  38728044 ttagattatgtccttgtaatttcagatgcttccactttgagtccctcacttaaacttgtcagcaaaatctg 38727974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 5554868 - 5554917
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  5554868 agggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 5554917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 35367409 - 35367458
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  35367409 agggtaaatacctcttttggtccctgcaatattagcgaattccggtttta 35367458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 5555251 - 5555199
Alignment:
Q  35 ttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||| ||||||||    
T  5555251 ttaagggttaacacctcttttcgtccctgtaatattagcgaatttcggtttta 5555199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 14820295 - 14820343
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  14820295 gggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 14820343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 18044205 - 18044157
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  18044205 gggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 18044157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 39889673 - 39889601
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||||||| ||||| || |||||||||||||||||||||| |||  |||||||||||  ||| |||||||||    
T  39889673 atttagattatgtccctaccatttcagattcttccacttttggtccatcacttaaactaatcaacagaatctg 39889601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 43851665 - 43851713
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  43851665 gggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 43851713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 7689903 - 7689853
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| ||||||||||| |||||    
T  7689903 aagggtaaatacctcttttcgtccctgtaatattagcgaattccgatttta 7689853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 26136679 - 26136733
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||| |||||||||||| || |||||||||| |||||||||| ||||||    
T  26136679 ttttaagggtgaatacctcttttcgttcctgtaatattagcgaattccagtttta 26136733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 43481699 - 43481645
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||| |||| ||||||| ||| ||||||||| |||||||||||||||||    
T  43481699 ttttaagggtaaatatctcttttcgtcactgtaatattagcgaattccggtttta 43481645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 10171522 - 10171473
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||| ||||| ||||||||||||| |||||||||||||||||    
T  10171522 agggtaaataccgcttttcgtccctgtaatattagcgaattccggtttta 10171473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 28977686 - 28977755
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaat 171  Q
    ||||||||||||||| |||||||||| ||| |||||||||| ||| ||| || ||||| |||| ||||||    
T  28977686 atttagattctgtccctatcatttcatatttttccacttttggtccctcgctcaaactagtcagcagaat 28977755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 28978789 - 28978728
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtca 164  Q
    |||||||||| ||| |||||||| |||||||||| |||||  || |||||||||||||||||    
T  28978789 tttagattctatccctatcatttgagattcttccgcttttgatccctcacttaaacttgtca 28978728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 40487793 - 40487744
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||| |||||||||| |||||||| |||||||||| ||||||    
T  40487793 agggttaataccacttttggtccttgtaatattagcgaattccagtttta 40487744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 21148317 - 21148266
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||| |||||||||||| ||| ||||||||| || ||||||||||||||    
T  21148317 taagggtaaatacctcttttcgtctctgtaatattagtgaattccggtttta 21148266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 28977617 - 28977652
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgag 72  Q
    ||||||||||||| ||||||||||||||||||||||    
T  28977617 aagggttaataccccttttggtccctgtaatatgag 28977652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 30789887 - 30789837
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| ||  |||||||||||||    
T  30789887 aagggtaaatacctcttttcgtccctgtaatattagtaaattccggtttta 30789837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 40486627 - 40486677
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||  ||||||||||||||||||| | ||||||||| |||||    
T  40486627 aagggttaatactacttttggtccctgtaatattaacgaattccgatttta 40486677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 42113365 - 42113311
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||| ||||| |||||| ||||||||||||| | |||||| ||||||||    
T  42113365 ttttaagggtaaatacatcttttcgtccctgtaatattaacgaatttcggtttta 42113311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 7689523 - 7689572
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| |||||||| ||| ||||    
T  7689523 agggtaaatacctcttttcgtccctgtaatattagcgaatttcggcttta 7689572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 42606132 - 42606083
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||| |||||||    
T  42606132 agggtaaatatctctttttgtccctgtaatattagcgaattctggtttta 42606083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 28978853 - 28978809
Alignment:
Q  42 ttaatacctcttttggtccctgtaatatgagcgaattccggtttt 86  Q
    ||||||| | |||||||| |||||||||||||||| |||||||||    
T  28978853 ttaatacatattttggtctctgtaatatgagcgaaatccggtttt 28978809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 38726755 - 38726823
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaat 171  Q
    |||||||| ||||||| | ||||||||||||||||||||   || |||||||||||  |||| ||||||    
T  38726755 tttagattttgtccttgtaatttcagattcttccactttagatccctcacttaaaccagtcagcagaat 38726823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 40486696 - 40486744
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctca 151  Q
    |||||||||||||||| | |||| ||||| |||||||||||||| ||||    
T  40486696 tttagattctgtccttgtaattttagattattccacttttagtccctca 40486744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 41820980 - 41820932
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggttt 85  Q
    ||||||||||||| |||||||||||||||| || |||  ||||||||||    
T  41820980 aagggttaataccgcttttggtccctgtaaaattagctgattccggttt 41820932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 42112993 - 42113033
Alignment:
Q  47 acctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||| ||||||||||||| ||||||||||| |||||    
T  42112993 acctcttttcgtccctgtaatattagcgaattccgatttta 42113033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 44162666 - 44162710
Alignment:
Q  42 ttaatacctcttttggtccctgtaatatgagcgaattccggtttt 86  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||||||    
T  44162666 ttaataccttttttgatccctgtaatattagcgaattctggtttt 44162710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 28070459 - 28070603
Alignment:
Q  32 attttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnntatttagattctgtccttatcatttcaga 129  Q
    |||| |||||||||||||  ||||||||||||||||||||| ||||||  ||||||  ||||||         |||||||||||||||| | ||||||||    
T  28070459 atttaaagggttaataccatttttggtccctgtaatatgagtgaattctagttttagtccctgtaaaaaaaggtttagattctgtccttgtaatttcaga 28070558  T
Q  130 ttcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||||||||||| |||| ||||||||||||||||| || ||||||    
T  28070559 ttcttccactttgagtccctcacttaaacttgtcagcataatctg 28070603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 41424584 - 41424668
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctgtctacgtggcatg 187  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||| |||||| ||||| || ||||||||| | |||||||    
T  41424584 tttagattctgtccctgtcatttcagattcttccacttttagtccctcatttaaacatgtcagcaaaatctgtctgcatggcatg 41424668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 28071879 - 28071828
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  28071879 taagggttaataccccttttggtccctgtaatatgagcgaatttcggtttta 28071828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 29445190 - 29445135
Alignment:
Q  32 attttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||||    
T  29445190 attttaagggttaatatctcttttcgtccctgtaatattagcgaattccagtttta 29445135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 14143900 - 14143950
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  14143900 aagggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 14143950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 17762281 - 17762331
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  17762281 aagggtaaatacctctttttgtccctgtaatattagcgaattccggtttta 17762331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 14411696 - 14411745
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  14411696 agggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 14411745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 23979279 - 23979231
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  23979279 gggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 23979231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 41424515 - 41424562
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggttt 85  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||    
T  41424515 agggttaatacctcttttggtccttgcaatattagcgaattccggttt 41424562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 32233967 - 32234037
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatct 173  Q
    |||||||| ||||| |||||||| |||||||||||||||| ||| |||||| |||||| | | ||||||||    
T  32233967 tttagattttgtccctatcatttgagattcttccacttttggtccctcactaaaacttataagcagaatct 32234037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 6817118 - 6817171
Alignment:
Q  34 tttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||| |||||||||||| |||| |||||||| || ||||||||||||||    
T  6817118 tttaagggtaaatacctcttttcgtccttgtaatattagtgaattccggtttta 6817171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 7126296 - 7126247
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| ||||||||||||  |||||||||||| |||||||||||||||||    
T  7126296 agggtaaatacctcttttcatccctgtaatattagcgaattccggtttta 7126247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 24651078 - 24651029
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||| ||||||||| |||||||||||||||||    
T  24651078 agggtaaatacctcttttcgtctctgtaatattagcgaattccggtttta 24651029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 24837168 - 24837217
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||  |||||||||||||||||    
T  24837168 agggtaaatacctcttttcgtccctgtaataatagcgaattccggtttta 24837217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 41425831 - 41425790
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattc 79  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  41425831 agggttaatacctcttttggtccctgcaatatcagcgaattc 41425790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 24837547 - 24837499
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||||||||||||| |||||||||| ||||||    
T  24837547 gggtaaatacctcttttcgtccctgtaatattagcgaattccagtttta 24837499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 31799634 - 31799686
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggttt 85  Q
    ||||| |||| |||||||||||| |||||| |||||| |||||||||||||||    
T  31799634 ttttatgggtaaatacctcttttcgtccctataatattagcgaattccggttt 31799686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 41425761 - 41425677
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctgtctacgtggcatg 187  Q
    |||||||||| ||| | ||||||||||||||||||  ||||||| |||| |||||| ||||| || | | || ||||||||||||    
T  41425761 tttagattctatccctgtcatttcagattcttccatctttagtccctcatttaaacatgtcagcaaattatgcctacgtggcatg 41425677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 7125921 - 7126024
Alignment:
Q  42 ttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgt-nnnnnnntatttagattctgtccttatcatttcagattcttccac 138  Q
    |||||||||||||| || |||||||||| ||||||||||| |||||  ||||||         ||||||||| ||||| ||| |||||||||||||||||    
T  7125921 ttaatacctcttttcgttcctgtaatattagcgaattccgattttagtccctgtaaaaaaaagatttagattttgtccctataatttcagattcttccac 7126020  T
Q  139 tttt 142  Q
    ||||    
T  7126021 tttt 7126024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 31800012 - 31799969
Alignment:
Q  44 aatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||| |||||| |||||| |||||||||||||||||    
T  31800012 aatacctcttttcgtccctataatattagcgaattccggtttta 31799969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 41001725 - 41001682
Alignment:
Q  44 aatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||| |||| ||||||||||||| |||||||||||||||||    
T  41001725 aataccttttttcgtccctgtaatattagcgaattccggtttta 41001682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 20709595 - 20709541
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||||||||||| |||| |||||||| | ||||||  |||||||    
T  20709595 ttttaagggttaatacctcttttcgtccatgtaatattaacgaattttggtttta 20709541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 27158989 - 27159039
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||||||| |||| |||||||| |||||||| | ||||||    
T  27158989 aagggttaatacctcttttcgtccatgtaatattagcgaatttcagtttta 27159039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 28071806 - 28071736
Alignment:
Q  104 ttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||||| | ||||| | ||||||||||||||||||||  ||| |||||||||||  |||| |||||||||    
T  28071806 ttagattatatccttgtaatttcagattcttccactttaggtccctcacttaaaccagtcagcagaatctg 28071736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 14144280 - 14144231
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||||||| ||| ||||||||| | ||||||||| |||||    
T  14144280 agggttaatacctcttttcgtcactgtaatattaacgaattccgatttta 14144231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 17762661 - 17762612
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||| ||| ||||||||| |||||||    
T  17762661 agggtaaatacctcttttcgtccctgtagtattagcgaattctggtttta 17762612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 24074302 - 24074351
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| |||| |||||||| |||||||| ||||||||    
T  24074302 agggtaaatacctcttttcgtccatgtaatattagcgaatttcggtttta 24074351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 18336833 - 18336786
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| |||||||||| || |||||||||||||||||    
T  18336833 gggtaaatacctcttttcgtccctgtaa-attagcgaattccggtttta 18336786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 27159328 - 27159284
Alignment:
Q  43 taatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||| |||| |||||||| |||||||| ||||||||    
T  27159328 taatacctcttttcgtccttgtaatattagcgaatttcggtttta 27159284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 41001664 - 41001624
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccactttt 142  Q
    ||||||||| ||||| ||| |||||||||||||||||||||    
T  41001664 atttagattttgtccctataatttcagattcttccactttt 41001624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 36887678 - 36887819
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta--tttagattctgtccttatcatttcagattc 132  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||  ||||||        |  |||||||||  ||| |||||||| ||||||    
T  36887678 aagggttaatacctcttttggtccctgtaatattagcgaattttggttttagtccctgtaaaaaaaaaagtttagattccatccctatcatttgagattc 36887777  T
Q  133 ttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||||||||| ||| ||||||||||||||||| |||||||||    
T  36887778 ttccacttttggtccctcacttaaacttgtcagcagaatctg 36887819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 43313589 - 43313451
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta-tttagattctgtccttatcatttcagattcttc 135  Q
    ||||||||||| ||||||||| ||||||||| ||||||||| |||||||  ||||||        | |||||||||  ||| ||||||||  ||||||||    
T  43313589 gggttaataccacttttggtctctgtaatattagcgaattctggttttagtccctgtaaaaaaaaagtttagattccatccctatcatttgtgattcttc 43313490  T
Q  136 cacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||||| ||| ||||||||||||||||| |||||||||    
T  43313489 cacttttggtccctcacttaaacttgtcagcagaatctg 43313451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 53896444 - 53896584
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta-tttagattctgtccttatcatttcagattct 133  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||  ||||||        | |||||||||  ||| |||||||| ||||||     
T  53896444 aagggttaatacctcttttgatcgctgtaatatgagcgaattccggttttagtccctgtaaaaaaaaagtttagattccatccctatcattttagattcc 53896543  T
Q  134 tccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||||| || ||| ||||| |||||| |||| |||||||||    
T  53896544 tccactattggtccctcacataaactagtcagcagaatctg 53896584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 174
Target Start/End: Complemental strand, 20069677 - 20069539
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnntatttagattctgtccttatcatttcagattcttc 135  Q
    ||||| |||| | ||||| |||||||||||||||||||||||| |||||   ||||||         |||||||| ||||| |||||||| |||||||||    
T  20069677 agggtaaatatcccttttcgtccctgtaatatgagcgaattccagttttggtccctgtaaaaaaaagtttagattatgtccctatcatttgagattcttc 20069578  T
Q  136 cacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||||| |||||||| | |||| ||||| |||||||||    
T  20069577 cacttttggtctctcattgaaacatgtcagcagaatctg 20069539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 31082252 - 31082331
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctgtctacgtg 182  Q
    |||||||||||||| |||||||| |||||||||||||||| | | |||| | |||| ||||| ||||||||| |||||||    
T  31082252 tttagattctgtccctatcatttgagattcttccacttttggcccctcattgaaacatgtcagcagaatctgcctacgtg 31082331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 46935220 - 46935080
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttt-accctgtnnnnnnn-ta-tttagattctgtccttatcatttcagattc 132  Q
    ||||||||||||||||||||||||||| |||||| |||||||| || |||| | |||||        || |||||||||||||| | |||||| ||||||    
T  46935220 taagggttaatacctcttttggtccctataatattagcgaatttcgattttgatcctgtaaaaaaaatagtttagattctgtccatgtcattttagattc 46935121  T
Q  133 ttccacttttagtctctcacttaaacttgtcaccagaatct 173  Q
    ||||| ||||  ||||||| |||||| ||||| ||||||||    
T  46935120 ttccaattttgatctctcatttaaacatgtcagcagaatct 46935080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 50462706 - 50462635
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||| |||||||| ||||||||||||||||||||||||||  || |||||| |||| ||||| |||||||||    
T  50462706 tttaaattctgtcattatcatttcagattcttccacttttgatccctcactaaaacatgtcagcagaatctg 50462635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 18667670 - 18667620
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  18667670 aagggttaatacctcttttcgtccctgtaatattagcgaattccagtttta 18667620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 50462775 - 50462733
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattcc 80  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  50462775 agggttaatacctcttttggtccctgtaatattagcgaattcc 50462733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 12904813 - 12904862
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccacttttagtctctca 151  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  12904813 atttagattttgtccttataatttcagattcttccacttttggtctctca 12904862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 31218360 - 31218311
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  31218360 agggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 31218311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 48580241 - 48580196
Alignment:
Q  42 ttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||    
T  48580241 ttaatacctcttttcgtccctgtaatattagcgaattccggtttta 48580196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 9619361 - 9619309
Alignment:
Q  35 ttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||| |||||||    
T  9619361 ttaagggtaaatacctctttttgtccctgtaatattagcgaattctggtttta 9619309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 15640716 - 15640764
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  15640716 gggttaacacctcttttcgtccctgtaatattagcgaattccggtttta 15640764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 51029141 - 51029020
Alignment:
Q  49 ctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnntatttagattctgtccttatcatttcagattcttccacttttagtc 146  Q
    |||||||||||||||||||||||||||||| ||||||||  ||||||        |  |||||| |||||| | ||||||||||||||||||| || |||    
T  51029141 ctcttttggtccctgtaatatgagcgaatttcggttttagtccctgtaaaaa---aaatagattttgtcctcaacatttcagattcttccactattggtc 51029045  T
Q  147 tctcacttaaacttgtcaccagaat 171  Q
     |||||||||||  |||| ||||||    
T  51029044 cctcacttaaaccagtcagcagaat 51029020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 3018016 - 3018059
Alignment:
Q  44 aatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  3018016 aatacctcttttcgtccctgtaatattagcgaattccggtttta 3018059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 36889059 - 36888919
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggttttac-cctgtnnnnnnnta-tttagattctgtccttatcatttcagattct 133  Q
    |||||||||||||| |||||||||||| |||||| ||||||||  |||||||  |||||        | |||||||| ||||| | | |||||||||||     
T  36889059 taagggttaataccacttttggtccctataatattagcgaattttggttttagtcctgtaaaaaaaaaatttagattatgtccctgtaatttcagattcc 36888960  T
Q  134 tccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||||||||||| |||  |||| ||||||| |||||||||    
T  36888959 tccacttttagtccctcgtttaaccttgtcagcagaatctg 36888919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 41946963 - 41947013
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| || ||||||||||||||    
T  41946963 aagggtaaatacctcttttcgtccctgtaatattagtgaattccggtttta 41947013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 48259821 - 48259871
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||| ||||||| ||||||||||||| |||||||||||||||||    
T  48259821 aagggtaaatatctcttttcgtccctgtaatattagcgaattccggtttta 48259871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 46046806 - 46046754
Alignment:
Q  34 tttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||    
T  46046806 tttaagggtaaatacct-ttttcgtccctgtaatattagcgaattccggtttta 46046754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 9516615 - 9516658
Alignment:
Q  44 aatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||    
T  9516615 aatatctcttttcgtccctgtaatattagcgaattccggtttta 9516658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 31083463 - 31083428
Alignment:
Q  51 cttttggtccctgtaatatgagcgaattccggtttt 86  Q
    ||||| ||||||||||||||||||||||||||||||    
T  31083463 cttttcgtccctgtaatatgagcgaattccggtttt 31083428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 37013087 - 37013036
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||| |||||||| ||| ||||||||||||| ||||||||| |||||||    
T  37013087 taagggtaaatacctcatttcgtccctgtaatattagcgaattctggtttta 37013036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 31943959 - 31943997
Alignment:
Q  49 ctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  31943959 ctcttttcgtccctgtaatattagcgaattccggtttta 31943997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 3018389 - 3018340
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||| ||||||| ||||||||||||| | |||||| ||||||||    
T  3018389 agggttaatatctcttttcgtccctgtaatattaacgaatttcggtttta 3018340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 3273620 - 3273669
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||| |||||    
T  3273620 agggtaaatatctcttttcgtccctgtaatattagcgaattccgatttta 3273669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 4356255 - 4356210
Alignment:
Q  42 ttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||  |||||||||||| |||||||| ||||||||    
T  4356255 ttaatacctcttttcatccctgtaatattagcgaatttcggtttta 4356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 9397077 - 9397028
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| ||||| |||||| ||||||||||||| ||| |||||||||||||    
T  9397077 agggtaaatacttcttttcgtccctgtaatattagcaaattccggtttta 9397028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 46046429 - 46046478
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| ||||||| |||| ||||||||||||| ||||||||||| |||||    
T  46046429 agggtaaataccttttttcgtccctgtaatattagcgaattccgatttta 46046478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 46934070 - 46934119
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||| | ||||||||||||||||||| | | |||||||||||||    
T  46934070 agggttaatatcacttttggtccctgtaatattaacaaattccggtttta 46934119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 46934153 - 46934205
Alignment:
Q  121 catttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||| |||||||||||||||||||| |||| |||||||||||| || ||||||    
T  46934153 catttaagattcttccacttttagtc-ctcatttaaacttgtcagcataatctg 46934205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 9516988 - 9516940
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||| ||||||| ||||||||||||| |||||||| ||||||||    
T  9516988 gggtaaatatctcttttcgtccctgtaatattagcgaatttcggtttta 9516940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 26252615 - 26252567
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||| ||||||| ||||||||||||| |||||||||| ||||||    
T  26252615 gggtaaatatctcttttcgtccctgtaatattagcgaattccagtttta 26252567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 31083408 - 31083368
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccactttt 142  Q
    ||||||||| ||||| |||||||| ||||||||||||||||    
T  31083408 atttagattttgtccctatcatttgagattcttccactttt 31083368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 41947232 - 41947184
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||| ||||||| ||||||||||||| |||||||| ||||||||    
T  41947232 gggtaaatatctcttttcgtccctgtaatattagcgaatttcggtttta 41947184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 48579862 - 48579914
Alignment:
Q  35 ttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||||| ||||||||||||| | |||| | ||||||||    
T  48579862 ttaaggattaatacctcttttcgtccctgtaatattaacgaagttcggtttta 48579914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 142
Target Start/End: Complemental strand, 17606689 - 17606579
Alignment:
Q  34 tttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnntatttagattctgtccttatcatttcagatt 131  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||  ||||||        ||||||||| ||||||| | ||||||||||    
T  17606689 tttaagggttaatacctcttttcgtccctgtaatattagcgaattccggttttagtccctgtaaaaaaagatttagattttgtccttgtaatttcagatt 17606590  T
Q  132 cttccactttt 142  Q
    |||||||||||    
T  17606589 cttccactttt 17606579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 17500768 - 17500908
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta--tttagattctgtccttatcatttcagattct 133  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||||  | ||||        |  |||||||||  ||| |||||||| ||||| |    
T  17500768 agggttaataccatttttggtccctgtaatattagcgaattccggttttagtctctgtaaaaaaaaaagtttagattccatccctatcatttgagattat 17500867  T
Q  134 tccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||||||| ||| ||||||||||||||||| |||||||||    
T  17500868 tccacttttggtccctcacttaaacttgtcagcagaatctg 17500908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 21091868 - 21091924
Alignment:
Q  118 tatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||    
T  21091868 tatcatttgagattcttccacttttagtccctcacttaaacttgtcatcagaatctg 21091924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 27039637 - 27039685
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttt 86  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27039637 agggttaatacctcttttcgtccctgtaatatgagcgaattccggtttt 27039685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 33629070 - 33629020
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  33629070 aagggttaatacctctttttgtccctgtaatattagcgaattccggtttta 33629020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 37236716 - 37236766
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  37236716 aaggattaatatctcttttggtccctgtaatatgagcgaattccggtttta 37236766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 42510392 - 42510345
Alignment:
Q  40 ggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||    
T  42510392 ggttaataccacttttggtccctgtaatattagcgaattccggtttta 42510345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 18462284 - 18462334
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  18462284 aagggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 18462334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 26266481 - 26266554
Alignment:
Q  101 tatttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||||||||||||||| |||||||| ||||||||||||  ||  || ||||||| ||||||||| |||||||||    
T  26266481 tatttagattctgtccctatcatttgagattcttccacaattgttccctcacttgaacttgtcagcagaatctg 26266554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 43539730 - 43539677
Alignment:
Q  34 tttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||    
T  43539730 tttaagggttaatagctcttttcgtccctgtaatattagcaaattccggtttta 43539677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 43400752 - 43400800
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttt 86  Q
    |||||||||||||||||| ||| || |||||||||||||||||||||||    
T  43400752 agggttaatacctcttttcgtctctataatatgagcgaattccggtttt 43400800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 20996049 - 20996006
Alignment:
Q  35 ttaagggttaatacctcttttggtccctgtaatatgagcgaatt 78  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  20996049 ttaagggttaatacctctttttgtccctgtaatattagcgaatt 20996006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 17502107 - 17501969
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta-tttagattctgtccttatcatttcagattcttc 135  Q
    ||||||||| | |||||||||| |||||||| |||||||||||||||||  |||| |        | |||||||||||||| | | ||||||||||| ||    
T  17502107 gggttaatatcacttttggtccttgtaatattagcgaattccggttttagtccctataaaaaaaaagtttagattctgtccctgtaatttcagattcctc 17502008  T
Q  136 cacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||||||||| |||  |||| | ||||| |||||||||    
T  17502007 cacttttagtccctcgtttaaccctgtcagcagaatctg 17501969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 39711452 - 39711402
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| ||||||||| |||||||    
T  39711452 aagggtaaatacctcttttcgtccctgtaatattagcgaattctggtttta 39711402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 29696564 - 29696613
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| |||||||| ||||||||    
T  29696564 agggtaaatacctcttttcgtccctgtaatattagcgaatttcggtttta 29696613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 33628689 - 33628738
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| ||||||||| |||||||    
T  33628689 agggtaaatacctcttttcgtccctgtaatattagcgaattctggtttta 33628738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 26271196 - 26271124
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||||||||||||| |||||||| ||||||||| ||  ||  || ||||||| ||||||||| |||||||||    
T  26271196 atttagattctgtccctatcatttgagattcttctacaattgatccctcacttgaacttgtcagcagaatctg 26271124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 17606309 - 17606352
Alignment:
Q  44 aatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||    
T  17606309 aatacctcttttcgtccctgtaatattagcgaattccgatttta 17606352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 42510015 - 42510130
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnt-atttagattctgtccttatcatttcagattcttc 135  Q
    ||||||||||  |||||  |||||||||||| |||||||||||||||||  ||||||       | ||||||||| ||||| | | |||||| |||||||    
T  42510015 gggttaatactactttttatccctgtaatattagcgaattccggttttaatccctgtaaaaaaataatttagattttgtccctgtaatttcatattcttc 42510114  T
Q  136 cacttttagtctctca 151  Q
    ||||||||||| ||||    
T  42510115 cacttttagtccctca 42510130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 52058389 - 52058338
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||  |||||||    
T  52058389 taagggtaaatacctcttttcgtccctgtaatattagcgaattttggtttta 52058338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 26271266 - 26271216
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttt 86  Q
    |||||||||||||||||||| ||||| ||||||| |||||| | |||||||    
T  26271266 taagggttaatacctcttttagtcccagtaatattagcgaaattcggtttt 26271216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 4906957 - 4907002
Alignment:
Q  34 tttaagggttaatacctcttttggtccctgtaatatgagcgaattc 79  Q
    ||||||||| |||||||||||| ||||||||||||| || ||||||    
T  4906957 tttaagggtaaatacctcttttcgtccctgtaatattagtgaattc 4907002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 16294048 - 16294097
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||  |||||||||||||||||| |||||||| || |||||    
T  16294048 agggttaataccgattttggtccctgtaatattagcgaatttcgatttta 16294097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 20995697 - 20995746
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| ||||||||||||  || ||||||||| |||||||||||||||||    
T  20995697 agggtaaatacctcttttcatctctgtaatattagcgaattccggtttta 20995746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 18342395 - 18342347
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||||| |||| ||||||||||||| |||||||| ||||||||    
T  18342395 gggtaaataccttttttcgtccctgtaatattagcgaatttcggtttta 18342347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 30299229 - 30299269
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaa 76  Q
    ||||||| |||||||||||| ||||||||||||| ||||||    
T  30299229 taagggtaaatacctcttttcgtccctgtaatattagcgaa 30299269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 39826424 - 39826376
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| |||| |||||||| |||||||| ||||||||    
T  39826424 gggtaaatacctcttttcgtccatgtaatattagcgaatttcggtttta 39826376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 43400821 - 43400893
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctgt 175  Q
    |||||||||||||| ||  || | |||||||||||||  | ||| ||||||||| ||||||| ||||||||||    
T  43400821 tttagattctgtccctacaatataagattcttccactactggtccctcacttaaccttgtcagcagaatctgt 43400893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 52058011 - 52058059
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| |||| |||||||| | |||||||||||||||    
T  52058011 gggtaaatacctcttttcgtccttgtaatattaacgaattccggtttta 52058059  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 33131632 - 33131772
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta--tttagattctgtccttatcatttcagattct 133  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||||||  ||||||        |  |||||||||||||| ||||||||||||||||    
T  33131632 agggttaataccccctttggtccctgtaatatgagcgatttccggttttagtccctgtaaataaaaaaatttagattctgtccctatcatttcagattct 33131731  T
Q  134 tccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||| |||||  || |||||||||||| |||| |||||||||    
T  33131732 tccgcttttgctccctcacttaaactagtcagcagaatctg 33131772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 23276307 - 23276236
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||||||| ||||||| | |||||||||| ||||||||| |||||||||||||||||||||| |||||||||    
T  23276307 tttagattatgtccttgtaatttcagattattccactttgagtctctcacttaaacttgtcagcagaatctg 23276236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 33133518 - 33133379
Alignment:
Q  35 ttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta-tttagattctgtccttatcatttcagatt 131  Q
    |||||||||||||  ||||||||||||||||||| ||| ||| ||||||||||  ||||||        | |||||||  ||||| |||||||| |||||    
T  33133518 ttaagggttaatatatcttttggtccctgtaatacgagtgaaatccggttttagtccctgtaaaaaaaaagtttagatcatgtccctatcatttgagatt 33133419  T
Q  132 cttccacttttagtctctcacttaaacttgtcaccagaat 171  Q
    ||||| ||||| ||| ||||||||||||||||| ||||||    
T  33133418 cttccgcttttggtccctcacttaaacttgtcaacagaat 33133379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 41600340 - 41600288
Alignment:
Q  35 ttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  41600340 ttaagggtaaatacctctttttgtccctgtaatattagcgaattccggtttta 41600288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 14630335 - 14630473
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnntatttagattctgtccttatcatttcagattcttc 135  Q
    ||||||||||||  |||| || | ||||||||||||||||||||||||||  ||||||          ||||||||||||| | ||||||||||||||||    
T  14630335 agggttaataccctttttagttcttgtaatatgagcgaattccggttttagtccctgtaaaaaaaaggttagattctgtccctgtcatttcagattcttc 14630434  T
Q  136 cacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||  || ||| ||||||| |||| |||| |||||||||    
T  14630435 cacaattggtccctcacttgaactagtcaacagaatctg 14630473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 28218176 - 28218226
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  28218176 aagggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 28218226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 31852214 - 31852160
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||||||||||| ||||||||||||| | |||||| ||||||||    
T  31852214 ttttaagggttaatacctcttttcgtccctgtaatattaacgaatttcggtttta 31852160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 14647029 - 14646980
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  14647029 agggttaataccctttttagtccctgtaatatgagcgaattccggtttta 14646980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 20963872 - 20963823
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  20963872 agggtaaatacctctttttgtccctgtaatattagcgaattccggtttta 20963823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 23704662 - 23704711
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggttttac 88  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  23704662 gggtaaatacctcttttcgtccctgtaatattagcgaattccggttttac 23704711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 28218542 - 28218493
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  28218542 agggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 28218493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37968816 - 37968779
Alignment:
Q  1 tgtcaaataaaaatattttttcattattgaaattttaa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37968816 tgtcaaataaaaatattttttcattattgaaattttaa 37968779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 12006533 - 12006589
Alignment:
Q  31 aattttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| ||||| |||||||||||| ||||||||||||| ||||||||||| |||||    
T  12006533 aatttttagggtaaatacctcttttcgtccctgtaatattagcgaattccgatttta 12006589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 14801033 - 14800895
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta--tttagattctgtccttatcatttcagattctt 134  Q
    |||||||||||| ||||| ||| ||||||||||||||||| ||||||||  ||||||        |  |||||||| ||||| | |||||||||||||||    
T  14801033 gggttaataccttttttgttcc-tgtaatatgagcgaatttcggttttagtccctgtaaaaaaaaaagtttagattttgtccctgtcatttcagattctt 14800935  T
Q  135 ccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||  || ||||||||||| |||| |||| |||||||||    
T  14800934 ccacaattggtctctcacttgaactagtcagcagaatctg 14800895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 174
Target Start/End: Complemental strand, 15248025 - 15247887
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta--tttagattctgtccttatcatttcagattctt 134  Q
    |||||||||||| ||||| ||| ||||||||||||||||| ||||||||  ||||||        |  |||||||| ||||| | |||||||||||||||    
T  15248025 gggttaataccttttttgttcc-tgtaatatgagcgaatttcggttttagtccctgtaaaaaaaaaagtttagattttgtccctgtcatttcagattctt 15247927  T
Q  135 ccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    ||||  || ||||||||||| |||| |||| |||||||||    
T  15247926 ccacaattggtctctcacttgaactagtcagcagaatctg 15247887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 25772356 - 25772412
Alignment:
Q  31 aattttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||| |||||||||||| ||||||||||||| |||||||| || |||||    
T  25772356 aattttaagggtaaatacctcttttcgtccctgtaatattagcgaatttcgatttta 25772412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 23258301 - 23258255
Alignment:
Q  40 ggttaatacctcttttggtccctgtaatatgagcgaattccggtttt 86  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  23258301 ggttaatatctcttttggtctctgtaatattagcgaattccggtttt 23258255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 23257186 - 23257243
Alignment:
Q  114 tccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaat 171  Q
    |||||||| ||| |||||||||||||||||||| ||| |||| |||||||| ||||||    
T  23257186 tccttatcttttgagattcttccacttttagtccctcgcttagacttgtcagcagaat 23257243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 23705039 - 23704990
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||| ||||||||| |||||||||||||||||    
T  23705039 agggtaaatacctcttttcgtctctgtaatattagcgaattccggtttta 23704990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 20419536 - 20419584
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| |||||| |||||| |||||||||||||||||    
T  20419536 gggtaaatacctcttttcgtccctataatattagcgaattccggtttta 20419584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 20419915 - 20419867
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||||||||||||| | |||||||||||||||    
T  20419915 gggtaaatacctctttttgtccctgtaatattaacgaattccggtttta 20419867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 23274925 - 23274973
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||| |||||||||| ||||||||||||||||| || |||||    
T  23274925 gggttaataccccttttggtccttgtaatatgagcgaatttcgatttta 23274973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 38880099 - 38880051
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||||||||||||| ||| |||||||||||||    
T  38880099 gggtaaatacctcttttcgtccctgtaatattagcaaattccggtttta 38880051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 20459069 - 20459022
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggttt 85  Q
    ||||| |||||||||||| ||||||||||||| || ||||||||||||    
T  20459069 agggtaaatacctcttttcgtccctgtaatattagggaattccggttt 20459022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 14795549 - 14795598
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||  |||| |||| ||||||||||||||||||| ||||||    
T  14795549 agggttaataccctttttagtccttgtaatatgagcgaattccagtttta 14795598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 15242541 - 15242590
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||  |||| |||| ||||||||||||||||||| ||||||    
T  15242541 agggttaataccctttttagtccttgtaatatgagcgaattccagtttta 15242590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 38879723 - 38879764
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattcc 80  Q
    |||| |||||||||||| ||||||||||||| ||||||||||    
T  38879723 gggtaaatacctcttttcgtccctgtaatattagcgaattcc 38879764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 48672276 - 48672325
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| || ||||| ||||||||    
T  48672276 agggtaaatacctcttttcgtccctgtaatattagtgaatttcggtttta 48672325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 48672658 - 48672609
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||| ||||||||| |||||||| ||||||||    
T  48672658 agggtaaatacctcttttcgtctctgtaatattagcgaatttcggtttta 48672609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 10409441 - 10409485
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccacttttagtc 146  Q
    ||||||||| ||||||| | |||||||||||||| ||||||||||    
T  10409441 atttagattttgtccttgtaatttcagattcttctacttttagtc 10409485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 16995200 - 16995248
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||| ||||||||| |||||||| ||||||||    
T  16995200 gggtaaatacctcttttcgtctctgtaatattagcgaatttcggtttta 16995248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 24195250 - 24195210
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattc 79  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
T  24195250 gggtaaatacctcttttcgtccctgtaatattagcgaattc 24195210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 41599958 - 41600006
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||||||||||  |||||||||||| |||||||| ||||||||    
T  41599958 gggtaaatacctcttttcatccctgtaatattagcgaatttcggtttta 41600006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 3424771 - 3424936
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttt--accctgtnnnnnnnta---tttagattctgtccttatcatttcagat 130  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||   ||||||        |   ||||||||   ||| |||||||| ||||    
T  3424771 taagggttaatacctcttttggtccctgtaatattagcgatttccggttttggtccctgtaaaaaaaaaaagtttagatttcatccctatcatttgagat 3424870  T
Q  131 tcttccacttttagtctctcacttaaacttgtcaccagaatctgtctacgtggcatgatgagtgtg 196  Q
    ||||||||||||| || |||||||||| |||||| |||||||||   |||||||||| ||| ||||    
T  3424871 tcttccacttttaatccctcacttaaatttgtcagcagaatctgctgacgtggcatgttgattgtg 3424936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 174
Target Start/End: Complemental strand, 3426027 - 3425888
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgt-nnnnnnntatttagattctgtccttatcatttcagattctt 134  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||  |||  |         | ||||||||  |||||||||||| ||||||||    
T  3426027 agggttaatacctcttttggcccctgtaatattagcgaattccggttttagtcccaataaaaaaaaaaattagattccatccttatcatttgagattctt 3425928  T
Q  135 ccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||||||| ||| ||||| || |||||||| |||||||||    
T  3425927 ccacttttggtccctcacatagacttgtcagcagaatctg 3425888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 14162248 - 14162142
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgt-nnnnnnntatttagattctgtccttatcatttcagattcttc 135  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||  ||||||         ||||||||| ||||||| | ||||||||||||||    
T  14162248 gggttaatacctctttttgtccctgtaatattagcgaattccggttttagtccctgtaaaaaagagatttagattttgtccttgtaatttcagattcttc 14162149  T
Q  136 cactttt 142  Q
    |||||||    
T  14162148 cactttt 14162142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 5800982 - 5800936
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggttt 85  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  5800982 gggttaatacctcttttcgtccctgtaatattagcgaattccggttt 5800936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 9266973 - 9267023
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  9266973 aagggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 9267023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 14171970 - 14171916
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  14171970 tttttagggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 14171916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 14262034 - 14262084
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  14262034 aagggttaatatctcttttcgtccctgtaatattagcgaattccggtttta 14262084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 14262416 - 14262366
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  14262416 aagggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 14262366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 16721989 - 16722039
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  16721989 aagggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 16722039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 35741964 - 35741914
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  35741964 aagggttaataccacttttggtccctgtaatattagcgaattccagtttta 35741914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 32997274 - 32997342
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaat 171  Q
    |||||||||  ||| |||||||| |||||||||||||||| ||| |||| |||||||||||| ||||||    
T  32997274 tttagattccatccatatcatttaagattcttccacttttggtcactcatttaaacttgtcagcagaat 32997342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 35740817 - 35740865
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  35740817 gggttaatactacttttggtccctgtaatattagcgaattccggtttta 35740865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 36991038 - 36990922
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta-tttagattctgtccttatcatttcagattctt 134  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||||||  ||||||        | |||||||||||||| | | |||| ||||||||    
T  36991038 agggttaatactacttttggtccctgtaatattagcgaatttcggttttagtccctgtaaaaaaaaagtttagattctgtccctgtaattttagattctt 36990939  T
Q  135 ccacttttagtctctca 151  Q
    |||||||||||| ||||    
T  36990938 ccacttttagtccctca 36990922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 37016478 - 37016362
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta-tttagattctgtccttatcatttcagattctt 134  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||||||  ||||||        | |||||||||||||| | | |||| ||||||||    
T  37016478 agggttaatactacttttggtccctgtaatattagcgaatttcggttttagtccctgtaaaaaaaaagtttagattctgtccctgtaattttagattctt 37016379  T
Q  135 ccacttttagtctctca 151  Q
    |||||||||||| ||||    
T  37016378 ccacttttagtccctca 37016362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 30500041 - 30500148
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnntatttagattctgtccttatcatttcagattctt 134  Q
    |||||||||||||||||||  |||||||||||| |||||||| ||||||||  ||||||        ||||||||| ||||| | | |||||| ||||||    
T  30500041 aagggttaatacctcttttcatccctgtaatattagcgaatttcggttttagtccctgtaaaaaaaaatttagattttgtccctgtaatttcatattctt 30500140  T
Q  135 ccactttt 142  Q
    ||||||||    
T  30500141 ccactttt 30500148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 30500421 - 30500370
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||| ||||||    
T  30500421 taagggtaaatacctcttttcgtccctgtaatattagcgaattccagtttta 30500370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 20853693 - 20853743
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| |||||||| ||||||||    
T  20853693 aagggtaaatacctcttttcgtccctgtaatattagcgaatttcggtttta 20853743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 35995672 - 35995726
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||| |||||||||||| || |||||||||| |||||||||||||||||    
T  35995672 tttttagggtaaatacctcttttcgttcctgtaatattagcgaattccggtttta 35995726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 45969913 - 45969963
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| || ||||||||||||||    
T  45969913 aagggtaaatacctcttttcgtccctgtaatattagtgaattccggtttta 45969963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 11003723 - 11003780
Alignment:
Q  30 aaattttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||| |||||||||||| |||| |||||||| | |||||||||||||||    
T  11003723 aaatattaagggtaaatacctctttttgtccttgtaatattaccgaattccggtttta 11003780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 19112763 - 19112812
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| |||| |||||||| |||||||||||||||||    
T  19112763 agggtaaatacctcttttcgtccatgtaatattagcgaattccggtttta 19112812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 27946112 - 27946157
Alignment:
Q  42 ttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||    
T  27946112 ttaatacctcttttcgtccctgtaatattagcgaatttcggtttta 27946157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 27946244 - 27946195
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||| ||||||| |||||||||||||||||    
T  27946244 agggtaaatacctcttttcgtcccagtaatattagcgaattccggtttta 27946195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 49986526 - 49986575
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| || ||||||||||||||    
T  49986526 agggtaaatacctcttttcgtccctgtaatattagagaattccggtttta 49986575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 19720333 - 19720381
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||| ||||||| ||||||||||||| |||||||||||||||||    
T  19720333 gggtaaatatctcttttcgtccctgtaatattagcgaattccggtttta 19720381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 32998512 - 32998376
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnntatttagattctgtccttatcatttcagattctt 134  Q
    |||||||||||||  |||||||||||||||||| ||||||||| ||| |||   |||||         |||||||||||||| | | ||||||||||| |    
T  32998512 aagggttaataccatttttggtccctgtaatattagcgaattctggtgttagttcctgtaaaaaaaagtttagattctgtccctgtaatttcagattcct 32998413  T
Q  135 ccacttttagtctctcacttaaacttgtcaccagaat 171  Q
    |||||||||||| |||  |||| | ||||| ||||||    
T  32998412 ccacttttagtccctcgtttaaccatgtcagcagaat 32998376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 1067715 - 1067754
Alignment:
Q  40 ggttaatacctcttttggtccctgtaatatgagcgaattc 79  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  1067715 ggttaatacctcttttggtccttgtaatatcagcgaattc 1067754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 45970297 - 45970246
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||| |||||||||||| ||||||||||||| || ||||| ||||||||    
T  45970297 taagggtaaatacctcttttcgtccctgtaatattagtgaatttcggtttta 45970246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 9267358 - 9267304
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||| |||||||||||| |||| |||||||| ||||||||||| |||||    
T  9267358 tttttagggtaaatacctcttttcgtccttgtaatattagcgaattccgatttta 9267304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 14171585 - 14171635
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||| ||||| ||||||||||||| ||||||||||| |||||    
T  14171585 aagggtaaataccacttttcgtccctgtaatattagcgaattccgatttta 14171635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 16722375 - 16722321
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||| |||||||||||| ||||||||||||| |||||||| | ||||||    
T  16722375 tttttagggtaaatacctcttttcgtccctgtaatattagcgaatttcagtttta 16722321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 19113149 - 19113095
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||| |||||||||||| |||||| |||||| | |||||||||||||||    
T  19113149 ttttacgggtaaatacctcttttcgtccctataatattaacgaattccggtttta 19113095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 33372400 - 33372454
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||| |||| ||||||| ||||||||||||| ||||||||| |||||||    
T  33372400 tttttagggtaaatatctcttttcgtccctgtaatattagcgaattctggtttta 33372454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 35996055 - 35996005
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| ||||| |||||| ||||||||||||| ||||||||||| |||||    
T  35996055 aagggtaaatacatcttttcgtccctgtaatattagcgaattccgatttta 35996005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 36989826 - 36989860
Alignment:
Q  35 ttaagggttaatacctcttttggtccctgtaatat 69  Q
    ||||||||||||||| |||||||||||||||||||    
T  36989826 ttaagggttaataccacttttggtccctgtaatat 36989860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 37015266 - 37015300
Alignment:
Q  35 ttaagggttaatacctcttttggtccctgtaatat 69  Q
    ||||||||||||||| |||||||||||||||||||    
T  37015266 ttaagggttaataccacttttggtccctgtaatat 37015300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 14161866 - 14161919
Alignment:
Q  34 tttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||| |||| ||||||| ||||||||||||| |||||||||| ||||||    
T  14161866 tttatgggtaaatatctcttttcgtccctgtaatattagcgaattccagtttta 14161919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 21632899 - 21632940
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaatt 78  Q
    |||||| |||||||||||| ||||||||||||| ||||||||    
T  21632899 aagggtaaatacctcttttcgtccctgtaatattagcgaatt 21632940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 43572702 - 43572653
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccacttttagtctctca 151  Q
    ||||||||||||||| | | ||||||||||||||||||||| ||| ||||    
T  43572702 atttagattctgtccctgtaatttcagattcttccacttttggtccctca 43572653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 49986907 - 49986858
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||| ||||||| |||||||| ||||||||    
T  49986907 agggtaaatacctcttttcgtcccagtaatattagcgaatttcggtttta 49986858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 1067782 - 1067866
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctgtctacgtggcatg 187  Q
    |||||||||| ||  | |||||| |||||||||||  ||||||| ||||||||||| ||||| || | |||| |||| |||||||    
T  1067782 tttagattctatctctgtcattttagattcttccatctttagtccctcacttaaacatgtcagcaaattctgcctacatggcatg 1067866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 5800605 - 5800653
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||||||||||||| | |||||| ||||||||    
T  5800605 gggtaaatacctcttttcgtccctgtaatattaacgaatttcggtttta 5800653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 38283861 - 38283821
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccactttt 142  Q
    ||||||||| ||||| ||| |||||||||||||||||||||    
T  38283861 atttagattttgtccctataatttcagattcttccactttt 38283821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 174
Target Start/End: Original strand, 30958679 - 30958822
Alignment:
Q  34 tttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgtnnnnnnnta-tttagattctgtccttatcatttcagat 130  Q
    |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||  ||||||        | ||||||||   ||| |||||||| ||||    
T  30958679 tttatgggttaataccacttttggtccctgtaatattagcgaatttcggttttagtccctgtaaaaaaaaagtttagatttcatccctatcatttgagat 30958778  T
Q  131 tcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||||||||||| |||  |||||||||||||||| |||||||||    
T  30958779 tcttccacttttggtccatcacttaaacttgtcagcagaatctg 30958822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 12419103 - 12419052
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  12419103 taagggttaataccacttttggtccctgtaatattagcgaattccggtttta 12419052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 12431163 - 12431112
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  12431163 taagggttaataccacttttggtccctgtaatattagcgaattccggtttta 12431112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 30960051 - 30960001
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  30960051 aagggttaataccacttttggtccctgtaatattagcgaattccggtttta 30960001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 23046774 - 23046843
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaat 171  Q
    ||||||||||||||| | | |||||||||||||||||||| ||||  |||||||||||||||| ||||||    
T  23046774 atttagattctgtccctgtaatttcagattcttccactttgagtccttcacttaaacttgtcagcagaat 23046843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 33290430 - 33290377
Alignment:
Q  34 tttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||    
T  33290430 tttaagggttaataccgcttttggtccctgtaatattagcgaattctggtttta 33290377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 21481068 - 21481124
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaac 158  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  21481068 atttagattatgtcctcatcattttagattcttccacttttagtctctcaattaaac 21481124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 44098933 - 44098862
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatct 173  Q
    ||||||||| ||||| | | |||||||||||||||||||| ||||  |||||||||||||||| ||||||||    
T  44098933 atttagattatgtccctgtaatttcagattcttccactttgagtccttcacttaaacttgtcagcagaatct 44098862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 19251469 - 19251519
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  19251469 aagggttaatacctcttttcgtccctgtaatattagcgaatttcggtttta 19251519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 13284411 - 13284460
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||||||||    
T  13284411 agggttaataccactttttgtccctgtaatatcagcgaattccggtttta 13284460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 23046706 - 23046754
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttt 86  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  23046706 agggtaaatacctcttttcgtccttgtaatatgagcgaattccggtttt 23046754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 23047961 - 23047913
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttt 86  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  23047961 agggtaaatacctattttcgtccctgtaatatgagcgaattccggtttt 23047913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 23854688 - 23854736
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  23854688 gggttaatacctcttttcgtccctgtaatattagcgaatttcggtttta 23854736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 42670717 - 42670765
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  42670717 gggttaatacctcttttcgtccctgtaatagtagcgaattccggtttta 42670765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 19026480 - 19026535
Alignment:
Q  119 atcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctg 174  Q
    |||||||||||||| |||||| || ||| ||||||||||||||||| |||||||||    
T  19026480 atcatttcagattcctccactattggtccctcacttaaacttgtcagcagaatctg 19026535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 22263574 - 22263523
Alignment:
Q  36 taagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||| |||||||||||| || |||||||||| |||||||||||||||||    
T  22263574 taagggtaaatacctcttttcgttcctgtaatattagcgaattccggtttta 22263523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 23855072 - 23855025
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttt 86  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||||    
T  23855072 gggtaaatacctcttttcgtccctgtaatattagcgaattccggtttt 23855025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 17463471 - 17463421
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| | ||||||||||| |||||||||||||||||    
T  17463471 aagggtaaatacctcttttcgcccctgtaatattagcgaattccggtttta 17463421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 17850966 - 17850916
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| ||||||||||||| |||||||| ||||||||    
T  17850966 aagggtaaatacctcttttcgtccctgtaatattagcgaatttcggtttta 17850916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 26236473 - 26236424
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| |||||||| ||||||||    
T  26236473 agggtaaatacctcttttcgtccctgtaatattagcgaatttcggtttta 26236424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 13284791 - 13284743
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||  ||||||||||||||||||| |||||||| ||||||||    
T  13284791 gggttaatactgcttttggtccctgtaatattagcgaatttcggtttta 13284743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 17850587 - 17850635
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||||||||||||| ||||||||||| |||||    
T  17850587 gggtaaatacctcttttcgtccctgtaatattagcgaattccgatttta 17850635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 23806330 - 23806282
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||||||||||||| |||||||| ||||||||    
T  23806330 gggtaaatacctctttttgtccctgtaatattagcgaatttcggtttta 23806282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 13254809 - 13254766
Alignment:
Q  44 aatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||    
T  13254809 aatatctcttttcgtccctgtaatattagcgaattccggtttta 13254766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 19251853 - 19251742
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta--ccctgt-nnnnnnntatttagattctgtccttatcatttcaga 129  Q
    |||| ||||| |||||||||||| |||| |||||||| || ||||||||||||||  ||||||         ||||||||||||||||| | |||||| |    
T  19251853 tttttagggtaaatacctcttttcgtccttgtaatattagtgaattccggttttagtccctgtaaaaaaaagatttagattctgtccttgtaatttcata 19251754  T
Q  130 ttcttccacttt 141  Q
    ||||||||||||    
T  19251753 ttcttccacttt 19251742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 21482190 - 21482135
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaac 158  Q
    |||||||| ||||| | |||||| |||||||||||||||||||| |||| ||||||    
T  21482190 tttagattttgtccctgtcattttagattcttccacttttagtccctcaattaaac 21482135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 44099000 - 44098953
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttt 86  Q
    |||| |||| ||||||| ||||||||||||||||||||||| ||||||    
T  44099000 gggtaaatatctcttttcgtccctgtaatatgagcgaattctggtttt 44098953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 33290048 - 33290097
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||   |||||||||||||||||| |||||||||| ||||||    
T  33290048 agggttaatactgtttttggtccctgtaatattagcgaattccagtttta 33290097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 28416256 - 28416212
Alignment:
Q  34 tttaagggttaatacctcttttggtccctgtaatatgagcgaatt 78  Q
    |||||||||||||||| |||||||||||| |||||| || |||||    
T  28416256 tttaagggttaataccacttttggtccctttaatattagtgaatt 28416212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 187
Target Start/End: Original strand, 36359111 - 36359195
Alignment:
Q  103 tttagattctgtccttatcatttcagattcttccacttttagtctctcacttaaacttgtcaccagaatctgtctacgtggcatg 187  Q
    |||||||| ||||||| | || ||| || |||||||||||  || |||| | |||| ||||| |||||||||||||| |||||||    
T  36359111 tttagattttgtccttgtaatatcatatacttccactttttatccctcattaaaacatgtcagcagaatctgtctacatggcatg 36359195  T

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Target: scaffold0117 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 12357 - 12312
Alignment:
Q  42 ttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||    
T  12357 ttaatacctcttttcgtccctgtaatattagcgaattccggtttta 12312  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 21070916 - 21070871
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggt 83  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||    
T  21070916 agggttaataccccttttagtccctgtaatatgagcgaattccggt 21070871  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 24731934 - 24731983
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  24731934 agggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 24731983  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 9481182 - 9481230
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  9481182 gggtaaatacctcttttcgtccctgtaatattagcgaattccggtttta 9481230  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 21069514 - 21069562
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||  |||| |||||||||||||||||||||||||||||||    
T  21069514 gggttaatacccattttagtccctgtaatatgagcgaattccggtttta 21069562  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 18500309 - 18500363
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||| |||||||||||| |||||| |||||| |||||||| ||||||||    
T  18500309 ttttaagggtaaatacctcttttcgtccctataatattagcgaatttcggtttta 18500363  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 32017883 - 32017833
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||| ||||||| ||||||||||||| |||||||||||||||||    
T  32017883 aagggtaaatatctcttttcgtccctgtaatattagcgaattccggtttta 32017833  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 18500708 - 18500659
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| |||||||| ||||||||    
T  18500708 agggtaaatacctcttttcgtccctgtaatattagcgaatttcggtttta 18500659  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 9854267 - 9854215
Alignment:
Q  35 ttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||||||||||||  ||||| ||||||||||||| ||||||||| |||||||    
T  9854267 ttaagggttaatactgctttttgtccctgtaatattagcgaattctggtttta 9854215  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 15941303 - 15941351
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||  |||||||||||| ||||||| |||||||||||||||    
T  15941303 gggttaataccgtttttggtccctgaaatatgatcgaattccggtttta 15941351  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 10321738 - 10321781
Alignment:
Q  44 aatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  10321738 aatacttcttttcgtccctgtaatattagcgaattccggtttta 10321781  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 24732317 - 24732274
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattcc 80  Q
    |||||| |||||||||||| ||||||||||||| ||||||||||    
T  24732317 aagggtaaatacctcttttcgtccctgtaatattagcgaattcc 24732274  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 26385647 - 26385604
Alignment:
Q  44 aatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||    
T  26385647 aatacctcttttcgtccctgtaatattagcgaattccgatttta 26385604  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 2299697 - 2299643
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||| |||| ||||||| || |||||||||| |||||||||||||||||    
T  2299697 tttttagggtaaatatctcttttcgttcctgtaatattagcgaattccggtttta 2299643  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 34113641 - 34113595
Alignment:
Q  41 gttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||||||  |||||||||||||||||| |||||||| ||||||||    
T  34113641 gttaataccatttttggtccctgtaatattagcgaatttcggtttta 34113595  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 33714494 - 33714531
Alignment:
Q  50 tcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  33714494 tcttttcgtccctgtaatattagcgaattccggtttta 33714531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 9481493 - 9481453
Alignment:
Q  102 atttagattctgtccttatcatttcagattcttccactttt 142  Q
    ||||||||| ||||||| | |||||||||||||||||||||    
T  9481493 atttagattttgtccttgtaatttcagattcttccactttt 9481453  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 26385278 - 26385326
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| |||||||||||| ||| ||||||||| ||||||||| |||||||    
T  26385278 gggtaaatacctcttttcgtctctgtaatattagcgaattctggtttta 26385326  T

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Target: scaffold0449 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 7580 - 7530
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| ||||||| |||| ||||||||||||| |||||||||||||||||    
T  7580 aagggtaaatacctattttcgtccctgtaatattagcgaattccggtttta 7530  T

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Target: scaffold0185 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 3863 - 3917
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||| |||| ||||||| ||||||||||||| |||||||||||||||||    
T  3863 tttttagggtaaatatctcttttcgtccctgtaatattagcgaattccggtttta 3917  T

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Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 8319 - 8373
Alignment:
Q  33 ttttaagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||| ||||| |||||||||||| ||||||||||||| |||||||| ||||||||    
T  8319 tttttagggtaaatacctcttttcgtccctgtaatattagcgaatttcggtttta 8373  T

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Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 4941 - 4892
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||||||||| ||| |||||||||||||    
T  4941 agggtaaatacctcttttcgtccctgtaatattagcaaattccggtttta 4892  T

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Target: scaffold0361; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 4560 - 4610
Alignment:
Q  37 aagggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    |||||| |||||||||||| |||| |||||||| ||||||||||| |||||    
T  4560 aagggtaaatacctcttttcgtccttgtaatattagcgaattccgatttta 4610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 6058 - 6009
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||| |||||    
T  6058 agggtaaatacctcttttggtccctgcaatattagcgaattccgatttta 6009  T

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Target: scaffold0352; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 4666 - 4715
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| ||||||| ||||| |||||||||| ||||||    
T  4666 agggtaaatacctcttttagtccctgcaatattagcgaattccagtttta 4715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 5912 - 5873
Alignment:
Q  39 gggttaatacctcttttggtccctgtaatatgagcgaatt 78  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  5912 gggttaatacctcttttggtccatgtaatattagcgaatt 5873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 1785 - 1736
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| ||| |||||||| ||||||||||||| | |||||||||||||||    
T  1785 agggtaaatccctcttttcgtccctgtaatattaacgaattccggtttta 1736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 1719 - 1671
Alignment:
Q  104 ttagattctgtccttatcatttcagattcttccacttttagtctctcac 152  Q
    ||||||| ||||||| | ||||||||||||||||||||| ||| |||||    
T  1719 ttagattatgtccttgtaatttcagattcttccacttttggtccctcac 1671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 4879 - 4928
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||||||||||| || |||||||||| |||||||| ||||||||    
T  4879 agggtaaatacctctttttgttcctgtaatattagcgaatttcggtttta 4928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 16007 - 15958
Alignment:
Q  38 agggttaatacctcttttggtccctgtaatatgagcgaattccggtttta 87  Q
    ||||| |||| ||||||| |||| |||||||| |||||||||||||||||    
T  16007 agggtaaatatctcttttcgtccatgtaatattagcgaattccggtttta 15958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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