View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_26 (Length: 381)

Name: NF17080_low_26
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_26
NF17080_low_26
[»] chr4 (13 HSPs)
chr4 (21-361)||(5558439-5558779)
chr4 (55-361)||(5613065-5613374)
chr4 (55-361)||(5895482-5895791)
chr4 (55-307)||(5604947-5605202)
chr4 (55-338)||(5886660-5886946)
chr4 (185-338)||(5539720-5539873)
chr4 (55-361)||(5848418-5848727)
chr4 (185-352)||(5571569-5571736)
chr4 (256-347)||(5564465-5564556)
chr4 (236-361)||(5583767-5583892)
chr4 (105-225)||(5857650-5857770)
chr4 (105-224)||(5552725-5552844)
chr4 (51-89)||(5564257-5564295)
[»] chr8 (1 HSPs)
chr8 (32-162)||(1482663-1482796)


Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 21 - 361
Target Start/End: Original strand, 5558439 - 5558779
Alignment:
Q  21 gtataaatatgtggaagctagattttctagaggtccttccaattctgtgagaaaattgtgagaaatattctgctgttcaagacttagtgtccaaattcaa 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  5558439 gtataaatatgaggaagctagattttctagaggtccttccaattcagtgagaaaattgtgagaaatattcagctgttcaagacttagtgtccaaatccaa 5558538  T
Q  121 ttgggcactactccttgaatttggttagctgaaaggtctagatggaataacatggattggttcatcaagaaattagggaatgttttcaagttgcaggttg 220  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5558539 ttgggcactactccgtgaatttggttagctgaaaggtctagatggaataacatggattggttcatcaagaaattagggaaagttttcaagttgcaggttg 5558638  T
Q  221 ccaattctagacgtgtaatattgggaaagaaagtatgatcaacatttgcatcacttacattgattgatatgttgttatatgaaaggtttaatgcagttaa 320  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5558639 ccaattctagacgtgtaaatttgggaaagaaagtatgatcaacatttgcatcacttacattgattgatatgttgttatatgaaaggtttagtgcagttaa 5558738  T
Q  321 atttctaagctccaaaagtttatctagatgcagtgacccat 361  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5558739 atttctaagctccaaaagtttatctagatgcagtgacccat 5558779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 55 - 361
Target Start/End: Original strand, 5613065 - 5613374
Alignment:
Q  55 ccttccaattctgtgagaaaattgtgagaaatattctgctgttcaagactt---agtgtccaaattcaattgggcactactccttgaatttggttagctg 151  Q
    |||||||| ||||||||||||||||| ||||||||  ||||||||||||||   ||| ||||||| ||||| ||||| ||||||||||||||||| ||||    
T  5613065 ccttccaactctgtgagaaaattgtgtgaaatattaagctgttcaagactttgtagtttccaaatccaatttggcacaactccttgaatttggttggctg 5613164  T
Q  152 aaaggtctagatggaataacatggattggttcatcaagaaattagggaatgttttcaagttgcaggttgccaattctagacgtgtaatattgggaaagaa 251  Q
    ||||||||||||     ||  | ||||| ||  |||||||  |||| || ||||||| |||||||| |||||| |  |||  |  || ||||||||||      
T  5613165 aaaggtctagattttccaatgttgattgatttctcaagaatataggaaaagttttcaggttgcaggatgccaaatgaagatattcaaaattgggaaaggc 5613264  T
Q  252 agtatgatcaacatttgcatcacttacattgattgatatgttgttatatgaaaggtttaatgcagttaaatttctaagctccaaaagtttatctagatgc 351  Q
    ||| |||||| ||||||||||| |  |||| |||||||||||||| |||||||||| || | |   |||||| ||||||| |||||| | |||||| ||     
T  5613265 agtctgatcagcatttgcatcattctcatttattgatatgttgttgtatgaaaggtctagtcctaataaattactaagcttcaaaagctcatctagttgt 5613364  T
Q  352 agtgacccat 361  Q
    ||||||||||    
T  5613365 agtgacccat 5613374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 361
Target Start/End: Complemental strand, 5895791 - 5895482
Alignment:
Q  55 ccttccaattctgtgagaaaattgtgagaaatattctgctgttcaagact---tagtgtccaaattcaattgggcactactccttgaatttggttagctg 151  Q
    |||||||||||||||||||||||||| ||||||||  | |||| ||||||   |||| ||||||| |||||||||||| |||||||||||||||||  ||    
T  5895791 ccttccaattctgtgagaaaattgtgtgaaatattaagttgttgaagactctgtagtttccaaatccaattgggcactgctccttgaatttggttatgtg 5895692  T
Q  152 aaaggtctagatggaataacatggattggttcatcaagaaattagggaatgttttcaagttgcaggttgccaattctagacgtgtaatattgggaaagaa 251  Q
    |||||||||||   |  ||  | ||||| ||  |||||||  ||||||| |||||||||||||||| ||  || |  ||| ||  || ||||||||||      
T  5895691 aaaggtctagagatagcaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgataaataaagaagttcaaaattgggaaaggc 5895592  T
Q  252 agtatgatcaacatttgcatcacttacattgattgatatgttgttatatgaaaggtttaatgcagttaaatttctaagctccaaaagtttatctagatgc 351  Q
    ||| || ||| ||||||||||| |  |||| |||||||||||||| |||||||||| || | |   |||||| ||||||| |||||| | |||||| ||     
T  5895591 agtctggtcagcatttgcatcattctcatttattgatatgttgttgtatgaaaggtctagtcctaataaattactaagcttcaaaagctcatctagttgt 5895492  T
Q  352 agtgacccat 361  Q
    ||||||||||    
T  5895491 agtgacccat 5895482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 55 - 307
Target Start/End: Original strand, 5604947 - 5605202
Alignment:
Q  55 ccttccaattctgtgagaaaattgtgagaaatattctgctgttcaagact---tagtgtccaaattcaattgggcactactccttgaatttggttagctg 151  Q
    |||||||||||||||||||||||||| ||||||||  ||  || ||||||   |||| ||||||| ||||| ||||||||||||||||| | |||| |||    
T  5604947 ccttccaattctgtgagaaaattgtgtgaaatattaagccattgaagactttgtagtttccaaatccaattcggcactactccttgaatgttgttatctg 5605046  T
Q  152 aaaggtctagatggaataacatggattggttcatcaagaaattagggaatgttttcaagttgcaggttgccaattctagacgtgtaatattgggaaagaa 251  Q
    |||||||||||   |  ||  | ||||| |||||||||||  |||||||  |||  | |||||||| |||||| | || | || | |||||||||||| |    
T  5605047 aaaggtctagagatatcaatgttgattgattcatcaagaatctagggaaactttgtatgttgcaggatgccaaatataaaagttttatattgggaaagga 5605146  T
Q  252 agtatgatcaacatttgcatcacttacattgattgatatgttgttatatgaaaggt 307  Q
    | | |||||||||||||||||| |  |||||||||| |||||||| ||||||||||    
T  5605147 aatctgatcaacatttgcatcattcccattgattgacatgttgttgtatgaaaggt 5605202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 55 - 338
Target Start/End: Complemental strand, 5886946 - 5886660
Alignment:
Q  55 ccttccaattctgtgagaaaattgtgagaaatattctgctgttcaaga-ctt--agtgtccaaattcaattgggcactactccttgaatttggttagctg 151  Q
    ||||||| |||||||||||||||||| ||||||||  | | || |||| |||  |||||| |||| || |||||||  ||||||||||||||||||  ||    
T  5886946 ccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaactccttgaatttggttatttg 5886847  T
Q  152 aaaggtctagatggaataacatggattggttcatcaagaaattagggaatgttttcaagttgcaggttgccaattctagacgtgtaatattgggaaagaa 251  Q
    | |||||||||| || |||  | ||||| ||  |||||||  ||||||| |||||||||||||||| ||||||    ||||||  || ||||||||||      
T  5886846 acaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgccaaaaaaagacgttcaaaattgggaaaggt 5886747  T
Q  252 agtatgatcaacatttgcatcacttacattgattgatatgttgttatatgaaaggtttaatgcagttaaatttctaagctccaaaag 338  Q
     || |||||| ||||||||||| |  || |||||||||||||||| |||||||||| |||   |  |||||||||||||| ||||||    
T  5886746 tgtctgatcagcatttgcatcattctcaatgattgatatgttgttgtatgaaaggtgtaaactatgtaaatttctaagcttcaaaag 5886660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 338
Target Start/End: Complemental strand, 5539873 - 5539720
Alignment:
Q  185 tcaagaaattagggaatgttttcaagttgcaggttgccaattctagacgtgtaatattgggaaagaaagtatgatcaacatttgcatcacttacattgat 284  Q
    |||||||| ||||||| ||||||| |||||||| ||||||   ||||    ||||||||| |||| ||||||||||| ||||| || || | ||||||||    
T  5539873 tcaagaaactagggaaagttttcaggttgcaggatgccaacattagagtactaatattggaaaaggaagtatgatcagcattttcaacattcacattgat 5539774  T
Q  285 tgatatgttgttatatgaaaggtttaatgcagttaaatttctaagctccaaaag 338  Q
    |||||||||||| |||||||||| || ||||||||||||||| |||| ||||||    
T  5539773 tgatatgttgttgtatgaaaggtctagtgcagttaaatttcttagcttcaaaag 5539720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 361
Target Start/End: Complemental strand, 5848727 - 5848418
Alignment:
Q  55 ccttccaattctgtgagaaaattgtgagaaatattctgctgttcaagactt---agtgtccaaattcaattgggcactactccttgaatttggttagctg 151  Q
    |||||||||||||||||||||||||  |||||||   |  ||  |||||||   ||| ||||||| |||||||| || ||||||||||||||||||||||    
T  5848727 ccttccaattctgtgagaaaattgtatgaaatatcaagtagtgaaagactttttagtttccaaatccaattgggtaccactccttgaatttggttagctg 5848628  T
Q  152 aaaggtctagatggaataacatggattggttcatcaagaaattagggaatgttttcaagttgcaggttgccaattctagacgtgtaatattgggaaagaa 251  Q
    |||||| |||||     ||  | ||||| ||  ||| |||  ||||||| |||| ||||||||||| |||||| | |||   |   |  |||||||||      
T  5848627 aaaggtttagatatcccaatgttgattgatttttcaggaatctagggaaagtttgcaagttgcaggatgccaaatatagtgtttgtagcttgggaaaggc 5848528  T
Q  252 agtatgatcaacatttgcatcacttacattgattgatatgttgttatatgaaaggtttaatgcagttaaatttctaagctccaaaagtttatctagatgc 351  Q
     || ||||||||| |||||||| |  || |||||||||||||||| ||||||||| |||   ||||||||||||||||||||||||| | |||||| |||    
T  5848527 tgtctgatcaacacttgcatcattctcaatgattgatatgttgttgtatgaaagggttaggtcagttaaatttctaagctccaaaagctcatctagctgc 5848428  T
Q  352 agtgacccat 361  Q
    | ||||||||    
T  5848427 attgacccat 5848418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 352
Target Start/End: Complemental strand, 5571736 - 5571569
Alignment:
Q  185 tcaagaaattagggaatgttttcaagttgcaggttgccaattctagacgtgtaatattgggaaagaaagtatgatcaacatttgcatcacttacattgat 284  Q
    |||||||| ||||||| ||||||| |||||||| |||||| | || |    ||||||||| |||  ||||||||||| ||||| || || | ||||||||    
T  5571736 tcaagaaactagggaaagttttcaggttgcaggatgccaactttaaagtactaatattggaaaacgaagtatgatcagcattttcaacattcacattgat 5571637  T
Q  285 tgatatgttgttatatgaaaggtttaatgcagttaaatttctaagctccaaaagtttatctagatgca 352  Q
    |||||||||||| |||||||||| ||  ||||||||| | || ||||||||||| | |||||| ||||    
T  5571636 tgatatgttgttgtatgaaaggtctagggcagttaaactacttagctccaaaagctcatctagctgca 5571569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 5564465 - 5564556
Alignment:
Q  256 tgatcaacatttgcatcacttacattgattgatatgttgttatatgaaaggtttaatgcagttaaatttctaagctccaaaagtttatctag 347  Q
    ||||||||||| ||| || |  |||| |||||||||||||| ||||||||||||| | ||||||| |||| ||||||||||| |||||||||    
T  5564465 tgatcaacattagcaacattcccattaattgatatgttgttgtatgaaaggtttagttcagttaagtttccaagctccaaaattttatctag 5564556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 361
Target Start/End: Complemental strand, 5583892 - 5583767
Alignment:
Q  236 taatattgggaaagaaagtatgatcaacatttgcatcacttacattgattgatatgttgttatatgaaaggtttaatgcagttaaatttctaagctccaa 335  Q
    |||||||||||||| |||||| || |  ||||| | || ||||||| | |||||||||||| |||||||||| || || || ||||| |||||||||||     
T  5583892 taatattgggaaaggaagtataattaggatttgaaacatttacatttactgatatgttgttgtatgaaaggtctagtgtagataaatctctaagctccat 5583793  T
Q  336 aagtttatctagatgcagtgacccat 361  Q
    ||| | |||||| ||||| |||||||    
T  5583792 aagctcatctagctgcagcgacccat 5583767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 5857650 - 5857770
Alignment:
Q  105 tagtgtccaaattcaattgggcactactccttgaatttggttagctgaaaggtctagatggaataacatggattggttcatcaagaaattagggaatgtt 204  Q
    |||| ||||||| ||||| || |||| ||| ||||| |||||| ||||||||||||||  |   ||  |||||||||| ||||||||| ||||||  |||    
T  5857650 tagtttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagaatggtcaatctggattggtttatcaagaaactagggatagtt 5857749  T
Q  205 ttcaagttgcaggttgccaat 225  Q
    ||||||||||||| |||||||    
T  5857750 ttcaagttgcaggatgccaat 5857770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 5552725 - 5552844
Alignment:
Q  105 tagtgtccaaattcaattgggcactactccttgaatttggttagctgaaaggtctagatggaataacatggattggttcatcaagaaattagggaatgtt 204  Q
    |||| ||||||| || || || |||| ||| ||||| |||||| ||||||||||||||  |   ||   ||||||||| |||||||||||||| ||||||    
T  5552725 tagtttccaaatccagtttggtactattccatgaatctggttatctgaaaggtctagagagcccaatccggattggttaatcaagaaattaggaaatgtt 5552824  T
Q  205 ttcaagttgcaggttgccaa 224  Q
    || |||||||||| ||||||    
T  5552825 ttaaagttgcaggatgccaa 5552844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 5564257 - 5564295
Alignment:
Q  51 aggtccttccaattctgtgagaaaattgtgagaaatatt 89  Q
    |||||||||||| || |||||||||||||||||||||||    
T  5564257 aggtccttccaaatcagtgagaaaattgtgagaaatatt 5564295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 1482663 - 1482796
Alignment:
Q  32 tggaagctagattttctagaggtccttccaattctgtgagaaaattgtgagaaatattctgctgttcaagact---tagtgtccaaattcaattgggcac 128  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||  | |  | || |||   |||| ||||||| ||||| || |     
T  1482663 tggaagttagattttgtagaggtccttccaattctgtgagaaaattgtgtgaaatattaagttcctgaatactttctagtttccaaatccaattaggaag 1482762  T
Q  129 tactccttgaatttggttagctgaaaggtctaga 162  Q
    | ||||||||||||||||  ||||||||||||||    
T  1482763 tgctccttgaatttggttctctgaaaggtctaga 1482796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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