View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_27 (Length: 379)

Name: NF17080_low_27
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_27
NF17080_low_27
[»] chr2 (5 HSPs)
chr2 (121-375)||(44070621-44070875)
chr2 (105-238)||(44079191-44079324)
chr2 (43-129)||(44069960-44070046)
chr2 (250-323)||(19507801-19507874)
chr2 (250-322)||(28654705-28654777)
[»] chr7 (12 HSPs)
chr7 (251-322)||(41957697-41957768)
chr7 (250-323)||(3615323-3615396)
chr7 (250-322)||(42013601-42013673)
chr7 (250-310)||(42014593-42014653)
chr7 (253-307)||(1805095-1805149)
chr7 (250-322)||(40792958-40793030)
chr7 (322-375)||(16075406-16075459)
chr7 (279-322)||(10555077-10555120)
chr7 (279-322)||(31594311-31594354)
chr7 (285-323)||(3614419-3614457)
chr7 (250-323)||(47317788-47317861)
chr7 (250-322)||(45075211-45075283)
[»] chr3 (10 HSPs)
chr3 (250-322)||(52560285-52560357)
chr3 (252-310)||(18946561-18946619)
chr3 (250-322)||(13936-14008)
chr3 (250-304)||(45031516-45031570)
chr3 (256-322)||(48165260-48165326)
chr3 (250-323)||(38108775-38108848)
chr3 (250-314)||(18942603-18942667)
chr3 (250-310)||(45035125-45035185)
chr3 (320-363)||(2843420-2843463)
chr3 (250-323)||(30715877-30715950)
[»] chr8 (7 HSPs)
chr8 (248-324)||(8037287-8037363)
chr8 (250-304)||(41270325-41270379)
chr8 (250-322)||(42095414-42095486)
chr8 (322-369)||(42267834-42267881)
chr8 (323-375)||(17980429-17980482)
chr8 (322-375)||(45472121-45472174)
chr8 (250-310)||(40494096-40494156)
[»] chr5 (7 HSPs)
chr5 (256-322)||(34393988-34394054)
chr5 (257-323)||(9042444-9042510)
chr5 (322-375)||(18743294-18743348)
chr5 (323-369)||(20470810-20470856)
chr5 (250-292)||(42056409-42056451)
chr5 (250-323)||(27014643-27014716)
chr5 (320-375)||(26748270-26748326)
[»] chr4 (3 HSPs)
chr4 (250-323)||(22438581-22438654)
chr4 (250-321)||(9981110-9981181)
chr4 (279-323)||(43035799-43035843)
[»] scaffold1212 (1 HSPs)
scaffold1212 (323-375)||(624-676)
[»] scaffold0688 (1 HSPs)
scaffold0688 (250-318)||(5924-5992)
[»] chr6 (3 HSPs)
chr6 (250-322)||(5620760-5620832)
chr6 (323-375)||(32261928-32261980)
chr6 (250-323)||(5613798-5613871)
[»] scaffold1043 (1 HSPs)
scaffold1043 (250-324)||(2607-2681)
[»] scaffold0063 (1 HSPs)
scaffold0063 (323-369)||(72410-72456)
[»] scaffold0445 (1 HSPs)
scaffold0445 (321-369)||(3648-3696)
[»] scaffold0371 (1 HSPs)
scaffold0371 (323-363)||(12347-12387)
[»] scaffold0037 (1 HSPs)
scaffold0037 (323-375)||(114311-114363)
[»] chr1 (1 HSPs)
chr1 (250-322)||(18239454-18239526)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 121 - 375
Target Start/End: Original strand, 44070621 - 44070875
Alignment:
Q  121 aaccagattgaacgtgccctgtgaagttttatgggatttcaagtttactccaaacaccactctttaggcccaaaacaaagcccatataaggttgcctaaa 220  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44070621 aaccagattgaacgtgcccgatgaagttttatgggctttcaagtttactccaaacaccactctttaggcccaaaacaaagcccatataaggttgcctaaa 44070720  T
Q  221 cccacaagacccaatcaacaaaagtaaagaattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagtta 320  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||||||| | ||| |||||||||    
T  44070721 cccacaagacccaatcaacaaaagtagagaattgcttttttgacaatgaaacattcctattgacacaagtaaaatacgtaaatgcctccagcggtagtta 44070820  T
Q  321 actgtaacatcccattttttcaacttgaaattttttacataaaatcagaataatc 375  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||    
T  44070821 actgtaacaccccgtttttccaacttgaaattttttacataaaatcagagtaatc 44070875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 44079191 - 44079324
Alignment:
Q  105 taaatctccaaaaggcaaccagattgaacgtgccctgtgaagttttatgggatttcaagtttactccaaacaccactctttaggcccaaaacaaagccca 204  Q
    ||||||||||||||||| |||||||||||||| || ||||| |||| |||| |||||||||||||||||||||||||||||||| |||| ||||||| ||    
T  44079191 taaatctccaaaaggcagccagattgaacgtggccagtgaaattttctgggttttcaagtttactccaaacaccactctttaggtccaacacaaagctca 44079290  T
Q  205 tataaggttgcctaaacccacaagacccaatcaa 238  Q
    |||||||||  | |||||||| ||||||||||||    
T  44079291 tataaggttctccaaacccactagacccaatcaa 44079324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 44069960 - 44070046
Alignment:
Q  43 aaaaacatatgggagaaaagcaattctcttgcattaatatatcttaaaagaaaactatattataaatctccaaaaggcaaccagatt 129  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| || |||||||    
T  44069960 aaaaacatatgggagaagagcaattctcttgcattagtatatcttagaagaaaactatattctaaatctccaaaagacagccagatt 44070046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 19507801 - 19507874
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaact 323  Q
    |||||||||||||||||||||   || ||||||| |||| ||||||||||||||| |||||  |||||| ||||    
T  19507801 aattgcttttttgacaatgaatacttcctattgacacaattaaaatacgtaaatgcccccagtggtagtaaact 19507874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 28654777 - 28654705
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    ||||| |||| | |||||||||| |||||||||| |||||||||||||  ||||| ||||| ||| |||||||    
T  28654777 aattgtttttctaacaatgaaacctttctattgacacaagtaaaatactgaaatgcccccagcggcagttaac 28654705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 41957697 - 41957768
Alignment:
Q  251 attgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    |||||||||||||||||||||| || ||||||| ||| |||||||||||||||| ||||||||| |||||||    
T  41957697 attgcttttttgacaatgaaaccttcctattgacacacgtaaaatacgtaaatgcccccaacggcagttaac 41957768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 3615396 - 3615323
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaact 323  Q
    |||||||||||||||||||||   || ||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  3615396 aattgcttttttgacaatgaatacttcctattgacacaaataaaatacgtaaatgcccccaacggtagttaact 3615323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 42013601 - 42013673
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    ||||||||||||||||||||||  || ||||||| |||||||||||||||||||| ||  | |||||||||||    
T  42013601 aattgcttttttgacaatgaaatcttcctattgacacaagtaaaatacgtaaatgcccttaccggtagttaac 42013673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 42014653 - 42014593
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtcccca 310  Q
    |||||||||| |||||||||||  |||||||||| |||||||||||||||||||| |||||    
T  42014653 aattgcttttctgacaatgaaaaatttctattgacacaagtaaaatacgtaaatgccccca 42014593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 1805149 - 1805095
Alignment:
Q  253 tgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtcc 307  Q
    |||||||||||||||||||  || ||||||| |||||||||||||||||||||||    
T  1805149 tgcttttttgacaatgaaatcttcctattgacacaagtaaaatacgtaaatgtcc 1805095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 40792958 - 40793030
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    |||| ||||||| ||||||||| ||| | ||||| |||||||||||||||||||| ||||| ||| |||||||    
T  40792958 aattcctttttttacaatgaaattttcccattgacacaagtaaaatacgtaaatgcccccagcggcagttaac 40793030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 375
Target Start/End: Original strand, 16075406 - 16075459
Alignment:
Q  322 ctgtaacatcccattttttcaacttgaaattttttacataaaatcagaataatc 375  Q
    |||||||| ||||||||  |||||||||||||||| |||||||||||| |||||    
T  16075406 ctgtaacaccccattttcccaacttgaaattttttgcataaaatcagagtaatc 16075459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 10555120 - 10555077
Alignment:
Q  279 attgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||    
T  10555120 attgacacaagtaaaatacctaaatgtccccaacggcagttaac 10555077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 31594354 - 31594311
Alignment:
Q  279 attgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||    
T  31594354 attgacacaagtaaaatacataaatgtccccaacggttgttaac 31594311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 3614419 - 3614457
Alignment:
Q  285 acaagtaaaatacgtaaatgtccccaacggtagttaact 323  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  3614419 acaagtaaaatacgtaaatgcccccagcggtagttaact 3614457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 47317861 - 47317788
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaact 323  Q
    |||||||||| ||||| |||||  |||  | ||| ||||||||||||| |||||| ||||| ||||||||||||    
T  47317861 aattgcttttctgacattgaaaactttacaatgacacaagtaaaatacttaaatgcccccagcggtagttaact 47317788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 45075211 - 45075283
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    ||||| |||| |||||||||||  || ||||||| |||||||||||||  ||||| ||||| ||| |||||||    
T  45075211 aattgtttttctgacaatgaaaacttcctattgacacaagtaaaatactaaaatgcccccagcggcagttaac 45075283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 52560285 - 52560357
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    ||||||||||||||||||||||| || ||||||| |||||||||||||||||||| | ||| ||| |||||||    
T  52560285 aattgcttttttgacaatgaaaccttcctattgacacaagtaaaatacgtaaatgcctccagcggcagttaac 52560357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 18946619 - 18946561
Alignment:
Q  252 ttgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtcccca 310  Q
    ||||||||||||| ||||||| || ||||||| |||||||||||||||||||| |||||    
T  18946619 ttgcttttttgacgatgaaaccttcctattgacacaagtaaaatacgtaaatgccccca 18946561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 14008 - 13936
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||||| || |||| | ||| ||| |||||||    
T  14008 aattgcttttttaacaatgaaactttcctattgacacaagtaaaatatgttaatgcctccagcggcagttaac 13936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 45031516 - 45031570
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatg 304  Q
    ||||||||||||||||||||||  || ||||||| |||| |||||||||||||||    
T  45031516 aattgcttttttgacaatgaaatcttcctattgacacaaataaaatacgtaaatg 45031570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 322
Target Start/End: Complemental strand, 48165326 - 48165260
Alignment:
Q  256 ttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    ||||||||||||||||  || ||||||| | |||||||||||||||||| | ||||||| |||||||    
T  48165326 ttttttgacaatgaaatcttcctattgacataagtaaaatacgtaaatgcctccaacggcagttaac 48165260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 38108775 - 38108848
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaact 323  Q
    |||||||||||||||||| |||  || ||||||| ||||||||||||| |||||  | ||| ||||||||||||    
T  38108775 aattgcttttttgacaataaaaagttcctattgacacaagtaaaatacttaaatacctccagcggtagttaact 38108848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 18942603 - 18942667
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacgg 314  Q
    ||||| |||| ||||||||||| ||| ||||||| |||||||||||||| ||||| ||| |||||    
T  18942603 aattgtttttctgacaatgaaaatttcctattgacacaagtaaaatacgcaaatgcccctaacgg 18942667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 45035185 - 45035125
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtcccca 310  Q
    |||| ||||| | |||||||||  || ||||||| ||||||||||||||||||||||||||    
T  45035185 aattacttttctaacaatgaaaacttcctattgacacaagtaaaatacgtaaatgtcccca 45035125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 363
Target Start/End: Complemental strand, 2843463 - 2843420
Alignment:
Q  320 aactgtaacatcccattttttcaacttgaaattttttacataaa 363  Q
    |||||||||||||| ||||| |||||||||||||||| ||||||    
T  2843463 aactgtaacatcccgtttttccaacttgaaattttttgcataaa 2843420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 30715877 - 30715950
Alignment:
Q  250 aattgcttttttgacaa-tgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaact 323  Q
    ||||||||||||||||| ||||| ||  ||||||| ||||||||||||| |||||  ||||| ||||||||||||    
T  30715877 aattgcttttttgacaaatgaaagttc-ctattgacacaagtaaaatacataaatacccccagcggtagttaact 30715950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 324
Target Start/End: Complemental strand, 8037363 - 8037287
Alignment:
Q  248 agaattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaactg 324  Q
    ||||||| |||||| |||||||||| ||   ||||| ||||||||||||| |||||||||||| |||||||||||||    
T  8037363 agaattgttttttttacaatgaaaccttcacattgacacaagtaaaatacataaatgtccccagcggtagttaactg 8037287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 41270379 - 41270325
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatg 304  Q
    |||||||||||||||| ||||| |||  |||||| ||||||||||||||||||||    
T  41270379 aattgcttttttgacagtgaaaatttcatattgacacaagtaaaatacgtaaatg 41270325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 42095414 - 42095486
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    ||||| |||| ||||||||||| ||||||||||| |||||||||||||  ||||| |||   |||||||||||    
T  42095414 aattgattttatgacaatgaaaattttctattgacacaagtaaaatactaaaatgccccttccggtagttaac 42095486  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 42267881 - 42267834
Alignment:
Q  322 ctgtaacatcccattttttcaacttgaaattttttacataaaatcaga 369  Q
    |||||||| ||| ||||| |||||||||||||||| ||||||||||||    
T  42267881 ctgtaacaccccgtttttccaacttgaaattttttgcataaaatcaga 42267834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 17980482 - 17980429
Alignment:
Q  323 tgtaacatcccattttttcaacttgaaattttttacataa-aatcagaataatc 375  Q
    ||||||| ||| ||||| |||||||||||||||||||||| ||||||| |||||    
T  17980482 tgtaacaccccgtttttccaacttgaaattttttacataataatcagagtaatc 17980429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 45472174 - 45472121
Alignment:
Q  322 ctgtaacatcccattttttcaacttgaaattttttacataaaatcagaataatc 375  Q
    |||||| | ||| ||||| |||||||||||||||| |||||||||||| |||||    
T  45472174 ctgtaataccccgtttttccaacttgaaattttttgcataaaatcagagtaatc 45472121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 40494156 - 40494096
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtcccca 310  Q
    ||||| |||| |||||||||||  || ||||||| ||||||||||||| ||||| ||||||    
T  40494156 aattgattttctgacaatgaaaacttcctattgacacaagtaaaatacttaaatatcccca 40494096  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 322
Target Start/End: Original strand, 34393988 - 34394054
Alignment:
Q  256 ttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    |||||| |||||||||| ||| |||||| |||||||||||||||||||| | ||| ||| |||||||    
T  34393988 tttttttacaatgaaacatttttattgacacaagtaaaatacgtaaatgcctccagcggcagttaac 34394054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 9042510 - 9042444
Alignment:
Q  257 tttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaact 323  Q
    |||||||||||||||| || ||||| | ||||||||||||  |||||  ||||| ||||||||||||    
T  9042510 tttttgacaatgaaaccttcctattaacacaagtaaaatatttaaatacccccagcggtagttaact 9042444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 375
Target Start/End: Original strand, 18743294 - 18743348
Alignment:
Q  322 ctgtaacatcccattttttcaacttgaaattttttacataa-aatcagaataatc 375  Q
    |||||||| |||||||| ||||||| ||||||||||||||| ||||||| |||||    
T  18743294 ctgtaacaccccattttctcaacttcaaattttttacataataatcagagtaatc 18743348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 20470856 - 20470810
Alignment:
Q  323 tgtaacatcccattttttcaacttgaaattttttacataaaatcaga 369  Q
    ||||||| ||| |||| ||||||||||||||||| ||||||||||||    
T  20470856 tgtaacaccccgttttctcaacttgaaattttttgcataaaatcaga 20470810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 42056409 - 42056451
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaa 292  Q
    |||||||||||||||| ||||  ||||||||||||||||||||    
T  42056409 aattgcttttttgacattgaatattttctattgatacaagtaa 42056451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 27014716 - 27014643
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaact 323  Q
    |||||||||||||||||||||  ||| ||||| | |||| ||||  |||| |||||||| | ||||||||||||    
T  27014716 aattgcttttttgacaatgaatatttcctattaacacaattaaatgacgttaatgtccctagcggtagttaact 27014643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 26748270 - 26748326
Alignment:
Q  320 aactgtaacatcccattttttcaacttgaaattttttacataa-aatcagaataatc 375  Q
    |||||||||| ||| ||||  |||||||||||||||||||||| ||||||| |||||    
T  26748270 aactgtaacaccccgttttcccaacttgaaattttttacataataatcagagtaatc 26748326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 22438654 - 22438581
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaact 323  Q
    ||||||||||||||||| | ||  || ||||||| ||||||||||||| |||||  ||||| ||||||||||||    
T  22438654 aattgcttttttgacaaaggaatgttcctattgacacaagtaaaatacataaatacccccagcggtagttaact 22438581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 9981110 - 9981181
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaa 321  Q
    ||||||||||||||||| |||   || ||||||| |||||||||||||||||||| |  || ||||||||||    
T  9981110 aattgcttttttgacaaggaatacttcctattgacacaagtaaaatacgtaaatgccttcagcggtagttaa 9981181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 43035799 - 43035843
Alignment:
Q  279 attgatacaagtaaaatacgtaaatgtccccaacggtagttaact 323  Q
    ||||| ||||||||||||| |||||||||||  ||||||||||||    
T  43035799 attgacacaagtaaaatacctaaatgtccccggcggtagttaact 43035843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 676 - 624
Alignment:
Q  323 tgtaacatcccattttttcaacttgaaattttttacataaaatcagaataatc 375  Q
    ||||||| ||| ||||  ||||||||||||||||||||||||||||| |||||    
T  676 tgtaacaccccgttttcccaacttgaaattttttacataaaatcagagtaatc 624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 5992 - 5924
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagt 318  Q
    |||||||||| ||||| |||||  |||| ||||| ||||||||||||||||||||  |||| |||||||    
T  5992 aattgcttttctgacattgaaaagtttcaattgacacaagtaaaatacgtaaatgctcccagcggtagt 5924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 5620832 - 5620760
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    ||||| |||| |||||||||||  || ||||||| ||||||||| |||||||||| ||||| ||| |||||||    
T  5620832 aattgtttttctgacaatgaaaacttcctattgacacaagtaaactacgtaaatgcccccagcggcagttaac 5620760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 32261980 - 32261928
Alignment:
Q  323 tgtaacatcccattttttcaacttgaaattttttacataaaatcagaataatc 375  Q
    ||||||| ||| ||||||||||||||| |||||| |||||||||||| |||||    
T  32261980 tgtaacaccccgttttttcaacttgaatttttttgcataaaatcagagtaatc 32261928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 5613798 - 5613871
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaact 323  Q
    ||||||||||||||||| | ||  || |||||||  |||||||||||| |||||  ||||| ||||||||||||    
T  5613798 aattgcttttttgacaaaggaaagttcctattgacccaagtaaaatacttaaatacccccagcggtagttaact 5613871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 2607 - 2681
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaactg 324  Q
    |||||||||| ||||||||| |  || ||||||| |||||||||||||  |||||||| || ||| |||||||||    
T  2607 aattgcttttctgacaatgacaacttcctattgacacaagtaaaatactaaaatgtcctcagcggcagttaactg 2681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 72410 - 72456
Alignment:
Q  323 tgtaacatcccattttttcaacttgaaattttttacataaaatcaga 369  Q
    ||||||| ||| ||||  |||||||||||||||||||||||||||||    
T  72410 tgtaacaccccgttttcccaacttgaaattttttacataaaatcaga 72456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 3696 - 3648
Alignment:
Q  321 actgtaacatcccattttttcaacttgaaattttttacataaaatcaga 369  Q
    ||||||||||| | |||||||||||| || |||||| ||||||||||||    
T  3696 actgtaacatctcgttttttcaacttaaatttttttgcataaaatcaga 3648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 12387 - 12347
Alignment:
Q  323 tgtaacatcccattttttcaacttgaaattttttacataaa 363  Q
    ||||||||||| ||||| |||||||||||||||| ||||||    
T  12387 tgtaacatcccgtttttccaacttgaaattttttgcataaa 12347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 114363 - 114311
Alignment:
Q  323 tgtaacatcccattttttcaacttgaaattttttacataaaatcagaataatc 375  Q
    ||||||| ||| ||||  |||||||||||||||| |||||||||||| |||||    
T  114363 tgtaacaccccgttttcccaacttgaaattttttgcataaaatcagagtaatc 114311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 18239454 - 18239526
Alignment:
Q  250 aattgcttttttgacaatgaaacttttctattgatacaagtaaaatacgtaaatgtccccaacggtagttaac 322  Q
    ||||||||||||||||  ||||  || ||||||| |||||||||||||  ||||  ||||||||| |||||||    
T  18239454 aattgcttttttgacatagaaaacttcctattgacacaagtaaaatactaaaatacccccaacggcagttaac 18239526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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