View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_29 (Length: 377)

Name: NF17080_low_29
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_29
NF17080_low_29
[»] chr6 (16 HSPs)
chr6 (11-359)||(34898644-34898990)
chr6 (58-169)||(1485125-1485235)
chr6 (98-218)||(34620921-34621041)
chr6 (98-218)||(34748358-34748478)
chr6 (105-219)||(882728-882842)
chr6 (98-206)||(34027359-34027467)
chr6 (98-169)||(31305826-31305897)
chr6 (98-142)||(2234550-2234595)
chr6 (58-136)||(30926790-30926868)
chr6 (102-206)||(25388116-25388219)
chr6 (98-169)||(4910943-4911014)
chr6 (132-221)||(434163-434253)
chr6 (174-228)||(19601372-19601426)
chr6 (174-216)||(34026417-34026459)
chr6 (98-154)||(852567-852623)
chr6 (98-158)||(17225887-17225947)
[»] chr7 (11 HSPs)
chr7 (58-230)||(27571858-27572029)
chr7 (58-216)||(38123598-38123755)
chr7 (98-221)||(45557400-45557523)
chr7 (100-228)||(40561678-40561806)
chr7 (118-228)||(33853404-33853514)
chr7 (98-222)||(22310385-22310509)
chr7 (102-168)||(40795969-40796035)
chr7 (102-206)||(12306760-12306866)
chr7 (100-169)||(41788353-41788422)
chr7 (199-228)||(45823307-45823336)
chr7 (98-206)||(40491613-40491721)
[»] chr4 (12 HSPs)
chr4 (115-230)||(33843763-33843878)
chr4 (98-169)||(55927749-55927820)
chr4 (98-144)||(4243422-4243468)
chr4 (98-138)||(33844012-33844052)
chr4 (98-169)||(8604601-8604672)
chr4 (174-225)||(48045675-48045726)
chr4 (98-144)||(2207114-2207160)
chr4 (98-164)||(32818354-32818420)
chr4 (123-168)||(25319108-25319153)
chr4 (107-144)||(32100336-32100373)
chr4 (98-158)||(10185229-10185289)
chr4 (99-158)||(16551993-16552050)
[»] chr2 (11 HSPs)
chr2 (98-224)||(1976788-1976916)
chr2 (98-169)||(44439289-44439360)
chr2 (123-169)||(15220840-15220886)
chr2 (98-169)||(16013683-16013760)
chr2 (100-170)||(37420171-37420243)
chr2 (64-158)||(42982546-42982639)
chr2 (199-237)||(11650668-11650706)
chr2 (98-144)||(42741012-42741058)
chr2 (125-170)||(40401621-40401666)
chr2 (184-228)||(3476349-3476393)
chr2 (125-169)||(4908852-4908896)
[»] scaffold0361 (1 HSPs)
scaffold0361 (98-169)||(14093-14164)
[»] chr3 (15 HSPs)
chr3 (102-226)||(36302222-36302348)
chr3 (98-223)||(46853459-46853584)
chr3 (67-144)||(30301002-30301079)
chr3 (98-237)||(51285605-51285744)
chr3 (58-166)||(40147832-40147939)
chr3 (58-144)||(35058357-35058443)
chr3 (98-167)||(35264392-35264461)
chr3 (65-169)||(27266773-27266876)
chr3 (98-164)||(31708223-31708289)
chr3 (123-224)||(5406964-5407061)
chr3 (98-157)||(37335025-37335084)
chr3 (105-224)||(40136096-40136214)
chr3 (98-208)||(3776557-3776667)
chr3 (99-169)||(35253446-35253516)
chr3 (108-169)||(29475364-29475425)
[»] chr1 (21 HSPs)
chr1 (64-169)||(48548993-48549095)
chr1 (108-223)||(1233350-1233465)
chr1 (102-144)||(28287340-28287382)
chr1 (98-163)||(213522-213587)
chr1 (105-170)||(1514385-1514450)
chr1 (127-228)||(6932104-6932205)
chr1 (58-144)||(8381962-8382047)
chr1 (100-144)||(20026168-20026212)
chr1 (100-144)||(24587949-24587993)
chr1 (106-170)||(52263625-52263689)
chr1 (98-169)||(4458421-4458492)
chr1 (98-169)||(34915101-34915172)
chr1 (98-144)||(7790646-7790692)
chr1 (98-143)||(47892393-47892438)
chr1 (98-166)||(3016197-3016265)
chr1 (98-158)||(10324928-10324988)
chr1 (98-138)||(17284131-17284171)
chr1 (98-169)||(30557539-30557608)
chr1 (102-154)||(30850393-30850445)
chr1 (132-196)||(35961437-35961501)
chr1 (101-157)||(52339719-52339775)
[»] chr8 (9 HSPs)
chr8 (102-207)||(16972005-16972110)
chr8 (102-169)||(32927931-32927998)
chr8 (98-169)||(35495295-35495366)
chr8 (98-144)||(13384658-13384704)
chr8 (98-169)||(32767422-32767495)
chr8 (177-223)||(38386430-38386476)
chr8 (127-227)||(2778577-2778677)
chr8 (98-206)||(26100088-26100196)
chr8 (200-228)||(43024963-43024991)
[»] chr5 (8 HSPs)
chr5 (98-223)||(15368508-15368632)
chr5 (101-169)||(8591519-8591587)
chr5 (117-204)||(35138967-35139054)
chr5 (98-168)||(36639972-36640042)
chr5 (108-145)||(7925431-7925468)
chr5 (183-228)||(9952555-9952600)
chr5 (99-143)||(9185020-9185064)
chr5 (123-167)||(37886019-37886063)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 34898644 - 34898990
Alignment:
Q  11 cagagatcacctagacgaagaaacagtaagttagcaaataagtggtgagaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattga 110  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||    
T  34898644 cagagatcacctagacgaagaaacagtaaattagcaaataagtggtgagaatcgattctacttgaagctagaaattagagtttttttattctagaattga 34898743  T
Q  111 ttttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaat 210  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  34898744 ttttaacactcgaatttattgttcaactcactttaacacaaatgtatcgaa-cataaattgtattaccttcgactcacttta-gccagaatcaattcaat 34898841  T
Q  211 caaaatcaatttttgtcaacgccaaacatacacttaattttgaaaagactactagagggagaggcctaccgtagctgcttatgatcatggcaagaacggg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898842 caaaatcaatttttgtcaacgccaaacatacacttaattttgaaaatactactagagggagaggcctaccgtagctgcttatgatcatggcaagaacggg 34898941  T
Q  311 acctctgtgtgcctgccaagaaagaccttccttaaagggggtcgaaaat 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898942 acctctgtgtgcctgccaagaaagaccttccttaaagggggtcgaaaat 34898990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 1485235 - 1485125
Alignment:
Q  58 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 157  Q
    ||||| ||||||||||||| |||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||||| |||  | |||||    
T  1485235 agaattgattctacttgaatctagaaattggagcttttg-attctagaattgattttaacactcaaatttattgttcaactcacttttacataagtgtat 1485137  T
Q  158 cgaaacataaat 169  Q
    | |||| |||||    
T  1485136 ccaaacgtaaat 1485125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 34620921 - 34621041
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 197  Q
    ||||||||||||||||| |||||  |||||||| ||||||||||||| |||  |||||||| ||||||||||    ||| |||| ||||| ||  |||||    
T  34620921 attctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagcca 34621020  T
Q  198 gaatcaattcaatcaaaatca 218  Q
    ||||| ||||| |||||||||    
T  34621021 gaatccattcactcaaaatca 34621041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 34748358 - 34748478
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 197  Q
    ||||||||||||||||| |||||  |||||||| ||||||||||||| |||  |||||||| ||||||||||    ||| |||| ||||| ||  |||||    
T  34748358 attctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagcca 34748457  T
Q  198 gaatcaattcaatcaaaatca 218  Q
    ||||| ||||| |||||||||    
T  34748458 gaatccattcactcaaaatca 34748478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 882728 - 882842
Alignment:
Q  105 aattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaa 204  Q
    |||||||||| ||| || ||||||||||| ||||||||||  || ||||||||| ||||||||||  | ||| |||| ||||| ||| | | ||||||||    
T  882728 aattgatttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaactagaatcaa 882827  T
Q  205 ttcaatcaaaatcaa 219  Q
    |||| ||||| ||||    
T  882828 ttcactcaaactcaa 882842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 34027467 - 34027359
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 197  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||| | ||| |||| |||| || ||||||  || | |  ||| ||||||||| |||||    
T  34027467 attctagaattgatttttacactcaaatttattattcaactcactcttacatgaatatatctaaccataaaccgtctcactttcaactcacttttagcca 34027368  T
Q  198 gaatcaatt 206  Q
     ||||||||    
T  34027367 caatcaatt 34027359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 31305897 - 31305826
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    ||||||||||||||||  |||||| ||||||||| |||||||||||| |||  ||| |||| ||||||||||    
T  31305897 attctagaattgatttatacactcaaatttattgatcaactcacttttacattaatatatccaaacataaat 31305826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 2234550 - 2234595
Alignment:
Q  98 attctagaattgattttaacactcgaattta-ttgttcaactcact 142  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||    
T  2234550 attctagaattgattttaacactcaaatttatttgttcaactcact 2234595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 30926868 - 30926790
Alignment:
Q  58 agaatcgattcta-cttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaa 136  Q
    ||||| ||||||| ||||||||||||||||||||       ||||||||||||||||| |||||| ||||||||||||||    
T  30926868 agaatggattctaacttgaagctagaaattggagtttttt-attctagaattgatttttacactcaaatttattgttcaa 30926790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 25388116 - 25388219
Alignment:
Q  102 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaat 201  Q
    ||||||||||||| |||||| ||||||||| |||||||||||| |||  ||| |||| |||  |||||  ||||| || | ||||| |||||| ||||||    
T  25388116 tagaattgattttgacactcaaatttattg-tcaactcacttttacataaatatatccaaatgtaaatcatattacctccaactcattttaagtcagaat 25388214  T
Q  202 caatt 206  Q
    |||||    
T  25388215 caatt 25388219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 4910943 - 4911014
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    ||||||||||||||||| |||  | ||||||| |||| ||||||||| |||  |||||||| ||||||||||    
T  4910943 attctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgtatccaaacataaat 4911014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 434253 - 434163
Alignment:
Q  132 ttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaa-tcaaaatcaatt 221  Q
    ||||||||||||| |||||||| |||| ||||| ||||  | ||| || | ||||||||| ||||| |||| |||||| ||||||||||||    
T  434253 ttcaactcacttttacacgaatatatccaaacacaaatcattttacctgcaactcacttttagccataatccattcaactcaaaatcaatt 434163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 19601426 - 19601372
Alignment:
Q  174 ttatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgtca 228  Q
    |||||||| ||||||| | ||  | ||||||||||||||||||||||||||||||    
T  19601426 ttatcttcaactcactattagttaaaatcaattcaatcaaaatcaatttttgtca 19601372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 34026459 - 34026417
Alignment:
Q  174 ttatcttcgactcactttaagccagaatcaattcaatcaaaat 216  Q
    |||||||| ||||||||| |||||||||||||||| |||||||    
T  34026459 ttatcttcaactcacttttagccagaatcaattcactcaaaat 34026417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 852567 - 852623
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatg 154  Q
    ||||||||||||||||| |||| | ||| ||||||| |||||||||| ||| |||||    
T  852567 attctagaattgatttttacacccaaatgtattgtttaactcacttttacatgaatg 852623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 17225887 - 17225947
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 158  Q
    ||||||||||||||||| |||  | ||||||| |||||||||| ||| ||| |||||||||    
T  17225887 attctagaattgatttttacatacaaatttatagttcaactcagttttacatgaatgtatc 17225947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 27571858 - 27572029
Alignment:
Q  58 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 157  Q
    ||||| |||||||||||||| ||||||||||||       |||||||||||||||||||||||| | |||||| |||||||||| || |||  |||||||    
T  27571858 agaattgattctacttgaagttagaaattggagcttttg-attctagaattgattttaacactcaagtttattattcaactcacatttacataaatgtat 27571956  T
Q  158 cgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgtcaac 230  Q
    | || |||||||  | ||| |||  ||||||||| ||||| ||||||||||  ||||||||||||||||||||    
T  27571957 ccaaccataaatcattttacctttaactcacttttagccataatcaattcacccaaaatcaatttttgtcaac 27572029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 216
Target Start/End: Complemental strand, 38123755 - 38123598
Alignment:
Q  58 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 157  Q
    ||||| |||||||||||||||||||||||| ||       ||||||||||||||||| |||||| ||||||||| |||||||||||| ||| |||||| |    
T  38123755 agaattgattctacttgaagctagaaattgtagcttcta-attctagaattgatttttacactcaaatttattggtcaactcacttttacatgaatgtgt 38123657  T
Q  158 cgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaat 216  Q
    |  |||| |||||   ||| |||| ||||| ||| || || |||||||| | |||||||    
T  38123656 ccgaacacaaattactttaccttcaactcaattttagtcataatcaatttactcaaaat 38123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 45557400 - 45557523
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 197  Q
    ||||||| ||||||||| |||| | ||||| | | |||||||||||| ||| ||||||||| ||||| ||||    ||| |||| ||||||||| || ||    
T  45557400 attctaggattgatttttacacacaaatttgtagctcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtca 45557499  T
Q  198 gaatcaattcaatcaaaatcaatt 221  Q
    ||||||||||| ||||||||||||    
T  45557500 gaatcaattcattcaaaatcaatt 45557523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 40561806 - 40561678
Alignment:
Q  100 tctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccaga 199  Q
    ||||||||| ||||  |||||| ||| |||||||||||||||||| ||| ||||||||| ||||||||||    |||  ||| ||||| |||   | |||    
T  40561806 tctagaattaatttatacactcaaatatattgttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttttactaga 40561707  T
Q  200 atcaattcaatcaaaatcaatttttgtca 228  Q
    ||||||||| |||||||||| ||||||||    
T  40561706 atcaattcactcaaaatcaacttttgtca 40561678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 33853514 - 33853404
Alignment:
Q  118 actcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatc 217  Q
    |||| |||||||||| || ||  |||| ||| ||||||||| ||||||||||    ||| |||| ||||||| | |||||||||||||||| | ||||||    
T  33853514 actcaaatttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatc 33853415  T
Q  218 aatttttgtca 228  Q
    |||||||||||    
T  33853414 aatttttgtca 33853404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 22310509 - 22310385
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 197  Q
    ||||||||||| ||||| |||||  |||||||| ||||| ||||||| ||  ||||||||| ||||||||||  | |||||||| ||||| |||   |||    
T  22310509 attctagaattaatttttacacttaaatttatttttcaattcacttttacgagaatgtatccaaacataaatctttttatcttcaactcaatttttacca 22310410  T
Q  198 gaatcaattcaatcaaaatcaattt 222  Q
     | ||||| || |||||||||||||    
T  22310409 aactcaatccactcaaaatcaattt 22310385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 40796035 - 40795969
Alignment:
Q  102 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaa 168  Q
    |||||||||||||||||||| |||||| | ||||| ||||||| ||| ||||||||| || ||||||    
T  40796035 tagaattgattttaacactcaaatttactattcaaatcacttttacatgaatgtatccaatcataaa 40795969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 12306760 - 12306866
Alignment:
Q  102 tagaattgattttaacactcgaattta--ttgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccaga 199  Q
    ||||||||||||| |||||| |||| |   | ||||||||||||| ||| |||| || | ||||||||||    |||||||| ||||||||| |||||||    
T  12306760 tagaattgatttttacactcaaattcactatattcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcacttttagccaga 12306859  T
Q  200 atcaatt 206  Q
    |||||||    
T  12306860 atcaatt 12306866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 41788353 - 41788422
Alignment:
Q  100 tctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    |||| ||||||||||||||||| |||||  ||||||||||||||| | |  |||||||  ||||||||||    
T  41788353 tctataattgattttaacactcaaatttgctgttcaactcacttttatattaatgtatacaaacataaat 41788422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 45823307 - 45823336
Alignment:
Q  199 aatcaattcaatcaaaatcaatttttgtca 228  Q
    ||||||||||||||||||||||||||||||    
T  45823307 aatcaattcaatcaaaatcaatttttgtca 45823336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 40491613 - 40491721
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 197  Q
    ||||||||||||| ||| |||| | ||||||  ||| |||||||||| ||| ||||||||| ||| ||||||    ||| |||| ||||||||| || ||    
T  40491613 attctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtca 40491712  T
Q  198 gaatcaatt 206  Q
     ||||||||    
T  40491713 aaatcaatt 40491721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 33843763 - 33843878
Alignment:
Q  115 aacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaa 214  Q
    |||||||||||||||||||||||||||| | ||| |||| |||| ||||||||||    |||  | | ||||||||| ||||||||||||||||||||||    
T  33843763 aacactcgaatttattgttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaa 33843862  T
Q  215 atcaatttttgtcaac 230  Q
    ||||||||||||||||    
T  33843863 atcaatttttgtcaac 33843878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 55927820 - 55927749
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    ||||||||||||||  | |||||| |||||||||||||| ||||||| ||| ||||||||| ||||||||||    
T  55927820 attctagaattgatcgtcacactcaaatttattgttcaagtcacttttacatgaatgtatccaaacataaat 55927749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 4243422 - 4243468
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcacttt 144  Q
    ||||||||||||||||| |||||| |||||||||||| |||||||||    
T  4243422 attctagaattgatttttacactcaaatttattgttctactcacttt 4243468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 33844012 - 33844052
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaact 138  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  33844012 attctaaaattgattttaacactcaaatttattgttcaact 33844052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 8604672 - 8604601
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    ||||||||||||||||| |||| | ||||||| ||| ||  |||||| ||| ||||||||| ||||||||||    
T  8604672 attctagaattgattttcacacacaaatttatagttgaatgcacttttacatgaatgtatccaaacataaat 8604601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 48045726 - 48045675
Alignment:
Q  174 ttatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttg 225  Q
    |||||||| ||||| ||| |||||||||||||| | ||||||||||||||||    
T  48045726 ttatcttcaactcagttttagccagaatcaatttactcaaaatcaatttttg 48045675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 2207114 - 2207160
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcacttt 144  Q
    |||||| ||||||||| ||||||| ||||||| ||||||||||||||    
T  2207114 attctataattgatttcaacactccaatttatggttcaactcacttt 2207160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 32818420 - 32818354
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaaca 164  Q
    |||||||||||||||||  ||| | ||||||| |||||||| ||||| ||| ||||||||| |||||    
T  32818420 attctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatccaaaca 32818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 25319108 - 25319153
Alignment:
Q  123 aatttattgttcaactcactttaacacgaatgtatcgaaacataaa 168  Q
    |||||||||||||||||||||| ||   ||||||||||||||||||    
T  25319108 aatttattgttcaactcacttttacgtaaatgtatcgaaacataaa 25319153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 32100336 - 32100373
Alignment:
Q  107 ttgattttaacactcgaatttattgttcaactcacttt 144  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  32100336 ttgatttttacactcaaatttattgttcaactcacttt 32100373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 10185229 - 10185289
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 158  Q
    |||||| ||||||| || |||||| ||||||||||| |||||||||| |||  ||||||||    
T  10185229 attctaaaattgatctttacactcaaatttattgtttaactcacttttacattaatgtatc 10185289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 16551993 - 16552050
Alignment:
Q  99 ttctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 158  Q
    |||||||||||||||| ||||   ||||||| |||||||||||||| ||| |||||||||    
T  16551993 ttctagaattgattttcacaca--aatttatagttcaactcacttttacatgaatgtatc 16552050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 1976916 - 1976788
Alignment:
Q  98 attctagaattgatttta--acactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagc 195  Q
    |||||||||||||||||   |||||| ||||||||||| |||||||||| ||| ||||||||| |||||||| | |  ||| |||| ||||| ||  |||    
T  1976916 attctagaattgatttttttacactcaaatttattgttgaactcacttttacatgaatgtatccaaacataagtcgctttaccttcaactcaattctagc 1976817  T
Q  196 cagaatcaattcaatcaaaatcaattttt 224  Q
    ||||||||||||| |||||| ||||||||    
T  1976816 cagaatcaattcactcaaaaacaattttt 1976788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 44439289 - 44439360
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||| |||  ||  |||| ||||||||||    
T  44439289 attctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaacataaat 44439360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 15220886 - 15220840
Alignment:
Q  123 aatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaat 15220840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 16013760 - 16013683
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcacttta------acacgaatgtatcgaaacataaat 169  Q
    ||||||||| ||||||| |||||| ||||||||| |||||||||||||      ||||||||||||| ||||||||||    
T  16013760 attctagaaatgatttttacactcaaatttattggtcaactcactttacagtttacacgaatgtatccaaacataaat 16013683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 37420243 - 37420171
Alignment:
Q  100 tctagaattgattttaacactcgaatttattgttcaactcactttaac--acgaatgtatcgaaacataaatt 170  Q
    ||||||||||||||| |||||| |||||||| ||||||||||||| ||  ||| || ||| ||||||||||||    
T  37420243 tctagaattgatttttacactcaaatttattattcaactcacttttacttacgtatatattgaaacataaatt 37420171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 42982546 - 42982639
Alignment:
Q  64 gattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 158  Q
    |||||||||||||||||||||||| ||       |||| |||||||||||| |||| | |||||||| | ||||||||||| ||| |||||||||    
T  42982546 gattctacttgaagctagaaattgtagcttttg-attccagaattgatttttacacacaaatttattttacaactcacttttacatgaatgtatc 42982639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 11650706 - 11650668
Alignment:
Q  199 aatcaattcaatcaaaatcaatttttgtcaacgccaaac 237  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  11650706 aatcaattcactcaaaatcaatttttgtcaacgcaaaac 11650668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 42741012 - 42741058
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcacttt 144  Q
    ||||||||||||||||| |||||| |||||| ||| |||||||||||    
T  42741012 attctagaattgatttttacactcaaatttactgtccaactcacttt 42741058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 40401666 - 40401621
Alignment:
Q  125 tttattgttcaactcactttaacacgaatgtatcgaaacataaatt 170  Q
    |||||||||||||| ||||| ||| ||||||||| |||||||||||    
T  40401666 tttattgttcaactgacttttacatgaatgtatccaaacataaatt 40401621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 3476393 - 3476349
Alignment:
Q  184 ctcactttaagccagaatcaattcaatcaaaatcaatttttgtca 228  Q
    |||||||| | |||||||||||||| | |||||||||||||||||    
T  3476393 ctcacttttatccagaatcaattcacttaaaatcaatttttgtca 3476349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 4908852 - 4908896
Alignment:
Q  125 tttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    ||||||||||||  |||||||||| ||||||||| ||||||||||    
T  4908852 tttattgttcaatccactttaacatgaatgtatccaaacataaat 4908896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 14164 - 14093
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||| ||| ||||||||| ||||||||||    
T  14164 attctagaattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaat 14093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 36302222 - 36302348
Alignment:
Q  102 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat--tgtattatcttcgactcactttaagccaga 199  Q
    |||||||||||||| ||||  |||||||||||||||||||||| ||| ||||| ||| | |||| |||  | | |||||||| ||||| ||| | || ||    
T  36302222 tagaattgattttagcacttaaatttattgttcaactcacttttacatgaatgaatccacacattaatcattttttatcttcaactcaattttaaccgga 36302321  T
Q  200 atcaattcaatcaaaatcaatttttgt 226  Q
    ||||||||| |||||||||||||||||    
T  36302322 atcaattcactcaaaatcaatttttgt 36302348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 46853584 - 46853459
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 197  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||  ||| ||||   ||||||||    ||| |||| ||| ||||  |||||    
T  46853584 attctagaattgattttaacactcaaatttattgttcaactcacttttacataaatatatcctgacataaatcactttaccttcaacttacttgtagcca 46853485  T
Q  198 gaatcaattcaatcaaaatcaatttt 223  Q
     |||||||||| |||| |||||||||    
T  46853484 aaatcaattcactcaagatcaatttt 46853459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 30301079 - 30301002
Alignment:
Q  67 tctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcacttt 144  Q
    |||| |||||||||||||||||||       |||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  30301079 tctatttgaagctagaaattggagttttttaattctagaattggttttaacactcaaatttattgttcaacccacttt 30301002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 51285605 - 51285744
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 197  Q
    |||||||||||||||||  ||||| ||||| ||||| ||| | |||| ||| ||||||||| || ||| ||||   |||  ||| ||||||||| |||||    
T  51285605 attctagaattgatttttgcactcaaatttgttgtttaacccgcttttacatgaatgtatccaagcatgaattactttacattcaactcacttttagcca 51285704  T
Q  198 gaatcaattcaatcaaaatcaatttttgtcaacgccaaac 237  Q
     ||| |||||| ||||||||||||||| ||| ||| ||||    
T  51285705 taataaattcactcaaaatcaatttttctcaccgcaaaac 51285744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 40147939 - 40147832
Alignment:
Q  58 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 157  Q
    ||||| |||||||||| ||||||||| ||||||       |||||||||||||||| |||||| ||||||||  ||||||||||||| |||  |||||||    
T  40147939 agaattgattctacttcaagctagaatttggagcttttg-attctagaattgatttcaacacttgaatttatcattcaactcacttttacattaatgtat 40147841  T
Q  158 cgaaacata 166  Q
    | |||||||    
T  40147840 ccaaacata 40147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 35058357 - 35058443
Alignment:
Q  58 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaat-ttattgttcaactcacttt 144  Q
    ||||| ||||||||||| ||||||||||| |||       |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  35058357 agaattgattctacttggagctagaaattcgagcttttg-attctagaattgattttaacactcaaatattattgttcaactcacttt 35058443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 35264461 - 35264392
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataa 167  Q
    |||||||||||||||||||||||  |||||||||||||| ||| ||| ||| ||||||| | ||||||||    
T  35264461 attctagaattgattttaacacttaaatttattgttcaagtcatttttacatgaatgtacccaaacataa 35264392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 27266876 - 27266773
Alignment:
Q  65 attctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaaca 164  Q
    ||||||||||||||||||||||| ||       |||| |||||| ||||| |||||| |||||||||||||||| ||||| ||| |||  |||| |||||    
T  27266876 attctacttgaagctagaaattgtagctaatg-attcaagaattaatttttacactcaaatttattgttcaactaacttttacatgaaaatatctaaaca 27266778  T
Q  165 taaat 169  Q
    |||||    
T  27266777 taaat 27266773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 31708289 - 31708223
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaaca 164  Q
    ||||||||||||||| |||||| | |||||||  ||||||||||||| ||| ||||||||| |||||    
T  31708289 attctagaattgattctaacacacaaatttataattcaactcacttttacatgaatgtatccaaaca 31708223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 5406964 - 5407061
Alignment:
Q  123 aatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaattt 222  Q
    |||||| | ||||| ||||||| ||| ||||||||| |||||||| ||    || |||| ||||| ||| ||| |||||||||||| |||||||||||||    
T  5406964 aatttactcttcaaatcacttttacatgaatgtatccaaacataactt----taccttcaactcaattttagctagaatcaattcactcaaaatcaattt 5407059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 37335084 - 37335025
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 157  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||| ||| | | ||||||||    
T  37335084 attctagaattgatttttacacttgaattcattgttcaactcatttttatatgaatgtat 37335025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 40136214 - 40136096
Alignment:
Q  105 aattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaa 204  Q
    |||||||||||||| || |||| |||||| |||||| ||| |||  |||||||  ||||| ||| | | |||  ||| | |||||||| |||||||| ||    
T  40136214 aattgattttaacaatcaaattcattgttgaactcatttttacaaaaatgtattaaaacaaaaaatattttacattcaagtcacttta-gccagaattaa 40136116  T
Q  205 ttcaatcaaaatcaattttt 224  Q
    |||| |||||||||||||||    
T  40136115 ttcattcaaaatcaattttt 40136096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 3776557 - 3776667
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 197  Q
    ||||||||||| ||||| |||||| ||||| ||| | |||||||||| |||  |||||||| || |||||||    |||  ||| ||||| ||| |||||    
T  3776557 attctagaattaatttttacactcaaatttgttgctgaactcacttttacatcaatgtatccaagcataaatcactttacattcaactcaattttagcca 3776656  T
Q  198 gaatcaattca 208  Q
    |||||||||||    
T  3776657 gaatcaattca 3776667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 35253516 - 35253446
Alignment:
Q  99 ttctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||| ||| || ||| || ||| ||||||    
T  35253516 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaat 35253446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 29475425 - 29475364
Alignment:
Q  108 tgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    |||||||||||||| ||||| |||||||||||| ||| |||  || ||||| ||||||||||    
T  29475425 tgattttaacactcaaattttttgttcaactcagtttgacataaacgtatcaaaacataaat 29475364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 48549095 - 48548993
Alignment:
Q  64 gattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaac 163  Q
    |||||||||||||||||||||||| ||       ||||||||||||||||| | ||||  ||||||||||||||||||||| |||  |||||||| ||||    
T  48549095 gattctacttgaagctagaaattgtagcttctg-attctagaattgatttttaaactc--atttattgttcaactcacttttacataaatgtatcaaaac 48548999  T
Q  164 ataaat 169  Q
    ||||||    
T  48548998 ataaat 48548993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 1233350 - 1233465
Alignment:
Q  108 tgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattc 207  Q
    ||||||| |||||| ||||||||||| |||||||||| ||| ||||||||| ||||||||||| | ||| |||  |||||  || | | | ||| |||||    
T  1233350 tgatttttacactcaaatttattgttgaactcactttcacatgaatgtatctaaacataaattattttaccttaaactcatgtttaactaaaattaattc 1233449  T
Q  208 aatcaaaatcaatttt 223  Q
    ||| ||||||||||||    
T  1233450 aatgaaaatcaatttt 1233465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 28287382 - 28287340
Alignment:
Q  102 tagaattgattttaacactcgaatttattgttcaactcacttt 144  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  28287382 tagaattgattttaacactcaaatttattgttcaactaacttt 28287340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 213587 - 213522
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaac 163  Q
    ||||||||||||||||| | |||| ||||| |||||||||||||||| ||| ||||| ||| ||||    
T  213587 attctagaattgatttttaaactcaaatttgttgttcaactcacttttacatgaatgcatccaaac 213522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 1514385 - 1514450
Alignment:
Q  105 aattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaatt 170  Q
    |||||||||| |||| | |||||||||||||||||| ||| ||| ||||||||| ||||| |||||    
T  1514385 aattgatttttacacacaaatttattgttcaactcatttttacatgaatgtatccaaacacaaatt 1514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 6932205 - 6932104
Alignment:
Q  127 tattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgt 226  Q
    ||||||||||||||| || ||||||||| ||| ||||  | ||  | |||  ||| ||||||||| || ||||||||||||| |||||||||| ||||||    
T  6932205 tattgttcaactcacctttacacgaatgaatccaaacgaagatcattttacattcaactcacttttagtcagaatcaattcattcaaaatcaaattttgt 6932106  T
Q  227 ca 228  Q
    ||    
T  6932105 ca 6932104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 8381962 - 8382047
Alignment:
Q  58 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcacttt 144  Q
    ||||| |||||||||||||||||||||||| ||        |||||||||||||||| ||| || | ||||||||||||||||||||    
T  8381962 agaattgattctacttgaagctagaaattgtagcctctag-ttctagaattgatttttacattcaagtttattgttcaactcacttt 8382047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 20026212 - 20026168
Alignment:
Q  100 tctagaattgattttaacactcgaatttattgttcaactcacttt 144  Q
    |||||||||||||| ||||||| |||||||||||||| |||||||    
T  20026212 tctagaattgatttgaacactcaaatttattgttcaattcacttt 20026168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 24587949 - 24587993
Alignment:
Q  100 tctagaattgattttaacactcgaatttattgttcaactcacttt 144  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||    
T  24587949 tctataattgattttaacactcaaatttattattcaactcacttt 24587993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 52263689 - 52263625
Alignment:
Q  106 attgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaatt 170  Q
    ||||||||| |||||| ||||||||||| |||||| ||| |||  |||||||| |||||||||||    
T  52263689 attgatttttacactcaaatttattgtttaactcagttttacattaatgtatccaaacataaatt 52263625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 4458421 - 4458492
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    ||||||||||||  ||||||||| ||||||||||| ||| ||||||| ||  ||||||||| ||| ||||||    
T  4458421 attctagaattggatttaacacttgaatttattgtacaattcacttttacctgaatgtatccaaatataaat 4458492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 34915101 - 34915172
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    ||||||||||||||| |||||| | | |||||  ||||||||||||| ||| ||||||||  ||||||||||    
T  34915101 attctagaattgattctaacacaccattttataattcaactcacttttacatgaatgtattcaaacataaat 34915172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 7790692 - 7790646
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcacttt 144  Q
    |||||| |||||||||| |||| | ||||||||||||||||||||||    
T  7790692 attctataattgatttttacacacaaatttattgttcaactcacttt 7790646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 47892438 - 47892393
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactt 143  Q
    |||||||||||||||||||||||  ||  |||||||||||||||||    
T  47892438 attctagaattgattttaacactaaaacatattgttcaactcactt 47892393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 3016197 - 3016265
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacata 166  Q
    |||||||||||||| || ||||   ||||||  |||||||||||||| ||| ||||||||| |||||||    
T  3016197 attctagaattgatgtttacacataaatttacggttcaactcacttttacatgaatgtatccaaacata 3016265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 10324988 - 10324928
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 158  Q
    |||||| |||||||||| |||||| |||||||||||  ||||||||| |||  ||||||||    
T  10324988 attctataattgatttttacactcaaatttattgttatactcacttttacattaatgtatc 10324928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 17284131 - 17284171
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaact 138  Q
    |||||| |||||||||| |||||| ||||||||||||||||    
T  17284131 attctaaaattgatttttacactcaaatttattgttcaact 17284171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 30557539 - 30557608
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    ||||||||||||||||| ||||   ||||||| |||||||||||||| | | ||||||||| ||||| ||||    
T  30557539 attctagaattgattttcacaca--aatttatagttcaactcacttttatatgaatgtatccaaacacaaat 30557608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 30850445 - 30850393
Alignment:
Q  102 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatg 154  Q
    |||||||||||||||||  | ||||||| |||||||||||||| ||| |||||    
T  30850445 tagaattgattttaacatacaaatttatagttcaactcacttttacatgaatg 30850393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 35961437 - 35961501
Alignment:
Q  132 ttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcc 196  Q
    ||||||||||||| ||| |||||||| |||||||||||  | ||| |||| ||||||||| ||||    
T  35961437 ttcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttagcc 35961501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 52339775 - 52339719
Alignment:
Q  101 ctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 157  Q
    |||||||||| ||| | |||| |||||||||||||| |||| || ||||||||||||    
T  52339775 ctagaattgagttttatactcaaatttattgttcaagtcacatttacacgaatgtat 52339719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 16972110 - 16972005
Alignment:
Q  102 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaat 201  Q
    ||||||||||||| | || | |||||||||||||| ||||||| ||| ||||||||  ||||| ||||  | ||| |||| ||||||||| || | ||||    
T  16972110 tagaattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcacttttagtctgaat 16972011  T
Q  202 caattc 207  Q
    ||||||    
T  16972010 caattc 16972005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 32927931 - 32927998
Alignment:
Q  102 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    ||||||| ||||| |||| | ||||||| |||||||||||||| ||| ||||||||| ||||| ||||    
T  32927931 tagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaat 32927998  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 35495295 - 35495366
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    |||||| |||||||||| | |||| |||||||||||||| ||||||| |   ||||||||| ||||||||||    
T  35495295 attctataattgatttttatactcaaatttattgttcaaatcacttttatttgaatgtatccaaacataaat 35495366  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 13384704 - 13384658
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcacttt 144  Q
    ||||||||||||||||| |||| | ||||||| ||||||||||||||    
T  13384704 attctagaattgattttcacacacaaatttatagttcaactcacttt 13384658  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 32767422 - 32767495
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacac--gaatgtatcgaaacataaat 169  Q
    |||| |||| ||| ||| |||||  |||||||||||||||||||||| ||||  ||||||||| ||||||||||    
T  32767422 attcgagaactgacttttacacttaaatttattgttcaactcacttttacacatgaatgtatccaaacataaat 32767495  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 38386430 - 38386476
Alignment:
Q  177 tcttcgactcactttaagccagaatcaattcaatcaaaatcaatttt 223  Q
    ||||| ||| ||||| ||||||||||||||| |||||||||||||||    
T  38386430 tcttcaacttacttttagccagaatcaattctatcaaaatcaatttt 38386476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 2778577 - 2778677
Alignment:
Q  127 tattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgt 226  Q
    ||||||||||||||||||  ||  ||| |||| ||| ||||||    |||||||| ||||||||| ||| ||||||| ||||   |||||||||||||||    
T  2778577 tattgttcaactcacttttgcataaatttatccaaaaataaatcactttatcttcaactcacttttagctagaatcagttcacataaaatcaatttttgt 2778676  T
Q  227 c 227  Q
    |    
T  2778677 c 2778677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 26100196 - 26100088
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 197  Q
    |||||| |||||||||| |||| | ||||||| |||||||||||||| |||  |||| ||| ||||| |||| |  ||| |||| ||||  ||| || ||    
T  26100196 attctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatccaaacacaaatagctttaccttcaactcgtttttagtca 26100097  T
Q  198 gaatcaatt 206  Q
    |||||||||    
T  26100096 gaatcaatt 26100088  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 43024963 - 43024991
Alignment:
Q  200 atcaattcaatcaaaatcaatttttgtca 228  Q
    |||||||||||||||||||||||||||||    
T  43024963 atcaattcaatcaaaatcaatttttgtca 43024991  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 15368508 - 15368632
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 197  Q
    |||||| ||||||| || |||||| ||| | |||||||| ||||||| ||| | ||||||  ||||||||||    ||  |||| ||||| ||| |||||    
T  15368508 attctataattgatctttacactcaaatatgttgttcaagtcacttttacatggatgtattcaaacataaatcac-ttcccttcaactcaatttcagcca 15368606  T
Q  198 gaatcaattcaatcaaaatcaatttt 223  Q
    ||||||||||| ||||||||||||||    
T  15368607 gaatcaattcactcaaaatcaatttt 15368632  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 8591519 - 8591587
Alignment:
Q  101 ctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 169  Q
    ||||||||||||||  ||||| ||||| |||||||||||||||| | | ||||||||| ||| ||||||    
T  8591519 ctagaattgattttttcactcaaatttgttgttcaactcacttttataggaatgtatccaaatataaat 8591587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 35139054 - 35138967
Alignment:
Q  117 cactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaa 204  Q
    ||||| |||||||||||||||||||||| | | |||||||||  |||||||||  | ||| |||| ||||| ||| || |||||||||    
T  35139054 cactcaaatttattgttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttagacagaatcaa 35138967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 36639972 - 36640042
Alignment:
Q  98 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaa 168  Q
    |||||||||||| |||| |||||| |||||| |||||| |||||||| ||| |||  |||| |||||||||    
T  36639972 attctagaattgttttttacactcaaatttaatgttcacctcacttttacatgaacctatcaaaacataaa 36640042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 7925431 - 7925468
Alignment:
Q  108 tgattttaacactcgaatttattgttcaactcacttta 145  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  7925431 tgatttttacactcaaatttattgttcaactcacttta 7925468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 9952600 - 9952555
Alignment:
Q  183 actcactttaagccagaatcaattcaatcaaaatcaatttttgtca 228  Q
    ||||||||| | ||| |||||||||| |||||||||||||||||||    
T  9952600 actcacttttatccataatcaattcattcaaaatcaatttttgtca 9952555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 9185064 - 9185020
Alignment:
Q  99 ttctagaattgattttaacactcgaatttattgttcaactcactt 143  Q
    |||||||||||||||||||| |  ||||||| |||||||||||||    
T  9185064 ttctagaattgattttaacatttaaatttatcgttcaactcactt 9185020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 37886063 - 37886019
Alignment:
Q  123 aatttattgttcaactcactttaacacgaatgtatcgaaacataa 167  Q
    |||||||||||||||||||||| |||| |||||||  ||||||||    
T  37886063 aatttattgttcaactcacttttacacaaatgtattcaaacataa 37886019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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