View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17080_low_30 (Length: 372)
Name: NF17080_low_30
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 4887004 - 4886648
Alignment:
| Q |
1 |
tctcatttatgataagaaagaatattgtaaaagggttttggaaagagcatgtgatcaagtagagttagctttgctagtatggctagtagacaaacacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
4887004 |
tctcatttatgataagaaagaatattgtaaaagggttttggaaagagcatgtgatcaagtagagttggctttgctagtatggctagtagacaaacatctt |
4886905 |
T |
|
| Q |
101 |
tgctttagtagtcaaattaaagcacttcactaacctacaatccatccattaggtacatataaagtgtgaaatccatcaaacttcactttccaatgaaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4886904 |
tgctttagtagtcaaattaaagcacttcactaacctaaaatccatccattaggtacatataaagtgtgaaatccatcaaacttcactttccaatgaaaac |
4886805 |
T |
|
| Q |
201 |
cacaacccacatgatcatgcttgggggaattgaaagatcacaattcacaaacacactctcaaaagaagatctcctctcctcatttcatctcacttcccat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4886804 |
cacaacccacatgatcatgcttgggggaattgaaagatcacaattcacaaacactctctcaaaagaagatctcctcttctcatttcatctcacttcccat |
4886705 |
T |
|
| Q |
301 |
ccccc-cttctatctaattccatatatatat--tctctctctcattgaccctacatc |
354 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4886704 |
ccccctcttctctctaattccatatatatattctctctctctcattgaccctacatc |
4886648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University