View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_33 (Length: 370)
Name: NF17080_low_33
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 45150309 - 45150016
Alignment:
| Q |
8 |
ccaagaatatttggagtttcttgctacaggcaagagg--aaattactacgttttagtatgtgtctaaaatgatgtttgctaaacgaggtaaagaattcat |
105 |
Q |
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| T |
45150309 |
ccaataatatttggagtttcttgctacaggaaaaaggggaaattactacgttttagtatgtgtctaaaatgatgtttgctaaacggggtaaagaattcat |
45150210 |
T |
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| Q |
106 |
gaagatatcttattctcataaccttttaagtgacttatacataaatcttgttatttaccgtataaatttaatattaaatagtattaggtctaaatcaatt |
205 |
Q |
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| T |
45150209 |
gaagatatcttattctcataaccttttaagtgacttatacataaatcttgttatttaccgtataaatttaatattaaacagtattagatctaaatcaatt |
45150110 |
T |
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| Q |
206 |
gggttggtctaatgttgttggtttaaaatcttataatgtacttcttttacggtttctaatacaattctcgatattaattttgatggatcaattc |
299 |
Q |
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| T |
45150109 |
aggttggtctaatgttgttggtttaaaatcttataatgtatttctttcacggtctctaatacaattctcgatattaattttgatggatcaattc |
45150016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 350
Target Start/End: Complemental strand, 45150007 - 45149978
Alignment:
| Q |
321 |
aaaatttccctagtaatacgccacgacata |
350 |
Q |
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| T |
45150007 |
aaaatttccctagtaatacgccacgacata |
45149978 |
T |
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