View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_34 (Length: 361)
Name: NF17080_low_34
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 356
Target Start/End: Original strand, 39858123 - 39858467
Alignment:
| Q |
12 |
gagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaacttacagattttgcttc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39858123 |
gagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaacttacagattttgcttc |
39858222 |
T |
|
| Q |
112 |
ctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgccaaactctcta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39858223 |
ctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgccaaactctcta |
39858322 |
T |
|
| Q |
212 |
gcaaccatgttctatatatcacatcacaaaattcataagttataatatgaattacaaaaccacaagcataaaaaccacaagatgcatatgacgtatgttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
39858323 |
gcaaccatgttctatatatcacatcacaaaattcttaagttataatataaattacaaaaccaaaagcataaaaaccacaagattcatatgacgtatgttt |
39858422 |
T |
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| Q |
312 |
ttcttcttcctactaaagcattttgatttttatatttcagaactg |
356 |
Q |
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| T |
39858423 |
ttcttcttcctactaaagcattgtgatttttatatttcagaactg |
39858467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 39848369 - 39848573
Alignment:
| Q |
12 |
gagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaacttacagattttgcttc |
111 |
Q |
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||||||||||||||||||| ||||| |||| ||| || ||||||||||||||||||||||||| |||||||||| | |||| ||||||||| |||||| |
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| T |
39848369 |
gagatgaaaaagtcataaattatgatgcttaaagcggctatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacagattgtgcttc |
39848468 |
T |
|
| Q |
112 |
ctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgccaaactctcta |
211 |
Q |
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||||||| ||||||| ||||| |||||||| ||||| |||| ||||||||| ||| | |||||||||||||||||||||| |||||||||||||| || |
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| T |
39848469 |
atcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgctggaattgagctggtatgccaaactcttta |
39848568 |
T |
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| Q |
212 |
gcaac |
216 |
Q |
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||||| |
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| T |
39848569 |
gcaac |
39848573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 233 - 348
Target Start/End: Original strand, 39848649 - 39848763
Alignment:
| Q |
233 |
catcacaaaattcataagttataatatgaattacaaaaccacaagcataaaaaccacaagatgcatatgacgtatgtttttcttcttcctactaaagcat |
332 |
Q |
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||||||| ||||||||||||||||||| ||||||||||| | | |||||||||||||||||| | | ||||||||||| |||||||||| |||||||||| |
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| T |
39848649 |
catcacataattcataagttataatataaattacaaaacaa-atgcataaaaaccacaagattcgtgtgacgtatgttgttcttcttccaactaaagcat |
39848747 |
T |
|
| Q |
333 |
tttgatttttatattt |
348 |
Q |
| |
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| |||||||||||||| |
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| T |
39848748 |
tgtgatttttatattt |
39848763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 39898998 - 39899185
Alignment:
| Q |
17 |
gaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttca-agcaatctcatgaacttacagattttgcttcctcg |
115 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||| |||||||| |||||||||| ||||| || |||| ||||| |||||| | ||||||||| |
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| T |
39898998 |
gaaaaagtcataaaataagaagcttgaagggagtatgtgagcaaataaatattgaaaggcttcatag--atctgatgaatttacaggtcctgcttcctca |
39899095 |
T |
|
| Q |
116 |
atgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgccaaac |
205 |
Q |
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|||| ||||||||||||| | |||||| ||||| |||| |||||||| ||| | |||||||||||||||||||||| ||||||||||| |
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| T |
39899096 |
atgtttgtcaaaggccgagaaggtcgacatgtatggttttgacgcttttcccataaccaaaagcgctggaattgagctggtatgccaaac |
39899185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 39912028 - 39912231
Alignment:
| Q |
15 |
atgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaa--cttca-agcaatctcatgaacttacagattttgcttc |
111 |
Q |
| |
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||||||| |||| | |||| |||||||||||||| ||||||||||||| |||||| ||||| ||||| || ||||||| || |||||| | |||||| |
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| T |
39912028 |
atgaaaaggtcacagaataagaagcttgaagggggtatatgagcaaaataatattcaaaaaagcttcatag--atctcataaatttacaggtgctgcttc |
39912125 |
T |
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| Q |
112 |
ctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgccaaactctcta |
211 |
Q |
| |
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||| ||||||||||| |||||| |||| ||||||||| ||||| ||||||| ||| | |||||||||||||||| |||| ||||||| |||||| | |
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| T |
39912126 |
ctcaatgtatgtcaatggccgaaatggacgatatgtatggtttagacgctttgcccatagccaaaagcgctggaatcgagccggtatgccgaactctttg |
39912225 |
T |
|
| Q |
212 |
gcaacc |
217 |
Q |
| |
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|||||| |
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| T |
39912226 |
gcaacc |
39912231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 39865475 - 39865651
Alignment:
| Q |
40 |
ttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaacttacagattttgcttcctcgatgtatgtcaaaggccgatatggt |
139 |
Q |
| |
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||||||||| ||||| ||||||| |||||||| || ||||||| |||| ||||| |||||| | ||||||||| ||| |||||| || ||| |||| |
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| T |
39865475 |
ttgaagggg-tatatcagcaaaataatattgataagcttcaagagatcttatgaatttacaggtcctgcttcctcaatgcgtgtcaacggacgaaatgga |
39865573 |
T |
|
| Q |
140 |
cgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgccaaactctctagcaacc |
217 |
Q |
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||| ||||| ||||| |||||||| | | |||||||||||||||||||||| |||||| ||||||| |||||||| |
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| T |
39865574 |
cgacatgtatcgttttcacgctttgcaaatacccaaaagcgctggaattgagctggtatgcaaaactctttagcaacc |
39865651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 37466879 - 37467079
Alignment:
| Q |
15 |
atgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatg-aacttacagattttgcttcct |
113 |
Q |
| |
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||||||| ||| |||||| |||||||||| | |||||||| |||| |||| || |||||| |||||| ||||| |||||||||||| |||||||| |
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| T |
37466879 |
atgaaaaggtcgcaaaataagaagcttgaaag---tatatgagaaaaatgatatcgataaactttaagcaagatcatggaacttacagattgtgcttcct |
37466975 |
T |
|
| Q |
114 |
cgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgccaaactctctagc |
213 |
Q |
| |
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| || | |||||| || |||| || ||||||||| |||| ||||||| ||| | ||||||||||||||||||| | ||||||| |||||| |||| |
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| T |
37466976 |
caatttgtgtcaatggacgattaggacgatatgtatggttttgacgctttgcccatagccaaaagcgctggaattgaacaggtatgccgaactctttagc |
37467075 |
T |
|
| Q |
214 |
aacc |
217 |
Q |
| |
|
|||| |
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|
| T |
37467076 |
aacc |
37467079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 38971913 - 38971851
Alignment:
| Q |
18 |
aaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttca |
80 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||| ||||| |
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|
| T |
38971913 |
aaaaagtcataaaataagaagtttgaagggggtatatgagcaaaatcatattgaaaagcttca |
38971851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 38968016 - 38967973
Alignment:
| Q |
174 |
aaaagcgctggaattgagctagtatgccaaactctctagcaacc |
217 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
38968016 |
aaaagcgctggaattgagctggtatgccaaactctttagcaacc |
38967973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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