View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_35 (Length: 355)
Name: NF17080_low_35
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 51753659 - 51753886
Alignment:
| Q |
16 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttgcattaaaaagttgcataa |
115 |
Q |
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| T |
51753659 |
atgaagaggaggcctgctataggacctgatgttgttgataagtaacactgtgatgctttcaacagcttctctccatctttaacactaaaaagttccataa |
51753758 |
T |
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| Q |
116 |
atactttctctactccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatctgttatctttggtcctaatctcactgcaggtta |
215 |
Q |
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| T |
51753759 |
acactttttctactccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatctgttatctttggtccaagtctcactgcagggta |
51753858 |
T |
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| Q |
216 |
caataacagtttcaagccatcagttaca |
243 |
Q |
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| T |
51753859 |
aaataacagtttcaagctatcaggtaca |
51753886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 51766426 - 51766507
Alignment:
| Q |
16 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttg |
97 |
Q |
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| T |
51766426 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttg |
51766507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 12196175 - 12196353
Alignment:
| Q |
16 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttgcattaaaaagttgcataa |
115 |
Q |
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| T |
12196175 |
atgaagagtaggcctgctagaggaccagatgttgttgatagataacattgagatgcttttagtagcctctctccatcttttacactaaatagttgcatga |
12196274 |
T |
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| Q |
116 |
atactttctctactccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatctgttatctttgg |
194 |
Q |
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| T |
12196275 |
acaccttttccactcctccaacttgaagaattctagctcctaagctcagctttcctttcactgtatcggttatgtttgg |
12196353 |
T |
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