View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_36 (Length: 344)

Name: NF17080_low_36
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_36
NF17080_low_36
[»] chr4 (8 HSPs)
chr4 (124-326)||(28281086-28281288)
chr4 (125-326)||(28289197-28289398)
chr4 (125-224)||(28300076-28300175)
chr4 (126-220)||(28278406-28278500)
chr4 (17-62)||(28281350-28281395)
chr4 (281-326)||(28278330-28278375)
chr4 (279-316)||(28299987-28300024)
chr4 (26-62)||(28289458-28289494)
[»] chr3 (1 HSPs)
chr3 (124-308)||(28746916-28747100)
[»] chr7 (2 HSPs)
chr7 (129-326)||(24729283-24729483)
chr7 (17-59)||(24729553-24729595)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 124 - 326
Target Start/End: Complemental strand, 28281288 - 28281086
Alignment:
Q  124 agaaatccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaat 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28281288 agaaatccacaaacctggccaaggatcacagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaat 28281189  T
Q  224 ctttgaaagcaaaatactcatttccaacgaacatgcaaagagccagggcataagatttctgaaattcatcaggtaaagcttccaaccaagattgttccac 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  28281188 ctttgaaagcaaaatactcatttccaacgaacatgcaaagagccagggcgtacgatttctgaaattcatcaggtaaagcttccaaccaagattgttccac 28281089  T
Q  324 aag 326  Q
    |||    
T  28281088 aag 28281086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 125 - 326
Target Start/End: Complemental strand, 28289398 - 28289197
Alignment:
Q  125 gaaatccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaatc 224  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| |||||    
T  28289398 gaaatccacaaacctggccaagaatcacagccttaacggaatgaaaaggagtagtattaagagcattgaaaatcaaatgcgaaggaggatatacggaatc 28289299  T
Q  225 tttgaaagcaaaatactcatttccaacgaacatgcaaagagccagggcataagatttctgaaattcatcaggtaaagcttccaaccaagattgttccaca 324  Q
    ||||||||| |||  |||||||   |||||||||||||||||| |||| |||| ||||||||||||| ||||||| ||||||||||||||||| || |||    
T  28289298 tttgaaagcgaaaatctcattttggacgaacatgcaaagagccggggcgtaaggtttctgaaattcaccaggtaatgcttccaaccaagattgctctaca 28289199  T
Q  325 ag 326  Q
    ||    
T  28289198 ag 28289197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 28300175 - 28300076
Alignment:
Q  125 gaaatccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaatc 224  Q
    ||||||||||||||||||||||||||| | ||||| |||| |||||||| ||||| |||| ||||| |||||||||||||| ||||||||||||| ||||    
T  28300175 gaaatccacaaacctggccaaggatcacaaccttagcagattgaaaaggggtagtattaagagcattgaaaatcaaatgcgcaggaggatatacataatc 28300076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 28278500 - 28278406
Alignment:
Q  126 aaatccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacag 220  Q
    ||||||||||||||||||||| |||| | ||||||||| ||||||||||||||| |||| ||||| ||||||||||||| ||||||||| |||||    
T  28278500 aaatccacaaacctggccaagaatcacaaccttaacaggatgaaaaggagtagtattaagagcattgaaaatcaaatgctgaggaggatttacag 28278406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 28281395 - 28281350
Alignment:
Q  17 gagagtgatagccccattgcttgaccaggtccagaataaggttcct 62  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  28281395 gagaatgatagccccattgcttgaccaggtccagaataaggttcct 28281350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 28278375 - 28278330
Alignment:
Q  281 tctgaaattcatcaggtaaagcttccaaccaagattgttccacaag 326  Q
    |||| |||||| |||||||| |||||||||||||||| ||||||||    
T  28278375 tctggaattcaccaggtaaaccttccaaccaagattgctccacaag 28278330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 28300024 - 28299987
Alignment:
Q  279 tttctgaaattcatcaggtaaagcttccaaccaagatt 316  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  28300024 tttctgaaattcaccaggtaaagcttccaaccacgatt 28299987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 28289494 - 28289458
Alignment:
Q  26 agccccattgcttgaccaggtccagaataaggttcct 62  Q
    ||||||||||||||||||||||||  |||||||||||    
T  28289494 agccccattgcttgaccaggtccatcataaggttcct 28289458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 124 - 308
Target Start/End: Original strand, 28746916 - 28747100
Alignment:
Q  124 agaaatccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaat 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  28746916 agaaatccacaaacctggccaaggatcacagccttaacagaatgaaaagcagtggtgttaaaagcatcgaaaatcaaatacggaggaggatatacagaat 28747015  T
Q  224 ctttgaaagcaaaatactcatttccaacgaacatgcaaagagccagggcataagatttctgaaattcatcaggtaaagcttccaa 308  Q
    |||||| |||||||||||||||||| | |||||||||||||||  |||| |||| ||||||||||||| ||||||||||||||||    
T  28747016 ctttgagagcaaaatactcatttccgatgaacatgcaaagagcaggggcgtaaggtttctgaaattcaccaggtaaagcttccaa 28747100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 129 - 326
Target Start/End: Complemental strand, 24729483 - 24729283
Alignment:
Q  129 tccacaaacctggccaaggatcaaagccttaacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaatctttg 228  Q
    |||||||||||||| |||||||| | |||  |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24729483 tccacaaacctggcaaaggatcacaacctagacagaatgaaaaggagaagtgttaaaagcatcgaaaatcaaatgtggaggaggatatacagaatctttg 24729384  T
Q  229 aaagcaaaatactcatttccaacgaacatgcaaagagccagggca-taagatttctgaaat---tcatcaggtaaagcttccaaccaagattgttccaca 324  Q
    |||| |||| |||||||||  || ||||||||||||| ||||| | |||||||||||||||   |||||||| ||||||||||||||||||| |||||||    
T  24729383 aaagaaaaaaactcatttctgacaaacatgcaaagag-cagggaagtaagatttctgaaattcatcatcaggcaaagcttccaaccaagattattccaca 24729285  T
Q  325 ag 326  Q
    ||    
T  24729284 ag 24729283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 24729595 - 24729553
Alignment:
Q  17 gagagtgatagccccattgcttgaccaggtccagaataaggtt 59  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  24729595 gagaatgatagccccattgcttcaccaggtccagaataaggtt 24729553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University