View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_4 (Length: 606)
Name: NF17080_low_4
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 19 - 599
Target Start/End: Original strand, 39699817 - 39700406
Alignment:
| Q |
19 |
aagtttccctttcttcattggtatctcttcttcctttcatctttgaactctcatcaacattatgcactcactttacacatcaaaagnnnnnnnncttc-- |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39699817 |
aagtttccctttcttcattggtatctcttcttcctttcatctttgaactctcatcaacattatgcactcactttacacatcaaaagttttttttcttctt |
39699916 |
T |
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| Q |
117 |
-cgttt------cgatatcatgatttttacgagaaagagatcataataatctgaaatttgactaaaaggtaaatagactatgattaataatgattatttc |
209 |
Q |
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| T |
39699917 |
ccgttttaacctcgatatcatgatttttacaagaaagagatcataataatctgaaatttgattaaaaggtaaatagactatgattaataatgattatttc |
39700016 |
T |
|
| Q |
210 |
agttatgattcatactcatattctcatgaaatattagtctattttgtttgttttaaagagggtacgtatcgtcaaaactcatatacactactaaatgcac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| |
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| T |
39700017 |
agttatgattcatactcatattctcatgaaatattagtctattttgtttgttttaaagagggtatgtatcgtcgaaactcatatacactactaaatacac |
39700116 |
T |
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| Q |
310 |
gtcgcaacgtatcaaatgttcttgcaaacaatttgagtccatcaactaggtataaatgctaaaaggatgatcatannnnnnnnatgttgttgattaaatt |
409 |
Q |
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| T |
39700117 |
gtcacaacgtatcaaatgttcttgcaaacaatttgagtccatcaactaggtataaatgttaaaaggatgatcatattttttttatgttgttgattaaatt |
39700216 |
T |
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| Q |
410 |
ataggtatggtagcggggttgtcactagcaagtgcaggaattggggggaatttgattgtatatcttataaaagaattcaatataaagagcatcaatgcag |
509 |
Q |
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| T |
39700217 |
ataggtatggtagcggggttgtcactagcaagtgcaggaattggggggaatttgattgtatatcttataaaagaattcaatataaagagcatcaatgcag |
39700316 |
T |
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| Q |
510 |
ctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgcaatccttgctgattctttctttggctctttctctg |
599 |
Q |
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| T |
39700317 |
ctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgcaatccttgctgattctttctttggctctttctctg |
39700406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 396 - 596
Target Start/End: Original strand, 39691015 - 39691214
Alignment:
| Q |
396 |
ttgttgattaaattataggtatggtagcggggttgtcactagcaagtgcaggaattggggggaatttgattgtatatcttataaaagaattcaatataaa |
495 |
Q |
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| T |
39691015 |
ttgttgattaa-ttataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaa |
39691113 |
T |
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| Q |
496 |
gagcatcaatgcagctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgcaatccttgctgattctttctttggctctttc |
595 |
Q |
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| T |
39691114 |
gagcatcaatgcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattc |
39691213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 397 - 596
Target Start/End: Complemental strand, 39931202 - 39931003
Alignment:
| Q |
397 |
tgttgattaaattataggtatggtagcggggttgtcactagcaagtgcaggaattggggggaatttgattgtatatcttataaaagaattcaatataaag |
496 |
Q |
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|||||| |||| |||||||||| |||||||| ||||||| | ||| | ||||||| || || |||||||||||||||| || |||||||||||||||| |
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| T |
39931202 |
tgttgaataaactataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaag |
39931103 |
T |
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| Q |
497 |
agcatcaatgcagctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgcaatccttgctgattctttctttggctctttct |
596 |
Q |
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| T |
39931102 |
agcatcactgcaactcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttggttctttct |
39931003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 465 - 599
Target Start/End: Complemental strand, 39935391 - 39935259
Alignment:
| Q |
465 |
ttgtatatcttataaaagaattcaatataaagagcatcaatgcagctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgc |
564 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||| ||||| | |||||| ||| ||| | | ||||||| || |
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| T |
39935391 |
ttgtatatcttatacaagaattcaatataaagagcatcattgctgctcagattgtaaacattgttatcggaagcatcaa--aatttctattcattgccgc |
39935294 |
T |
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| Q |
565 |
aatccttgctgattctttctttggctctttctctg |
599 |
Q |
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||| |||||||||| |||||||| || ||||||| |
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| T |
39935293 |
aattgttgctgattcattctttggatccttctctg |
39935259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 39931653 - 39931604
Alignment:
| Q |
19 |
aagtttccctttcttcattggtatctcttcttcctttcatctttgaactc |
68 |
Q |
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||||| |||||||||||||||| |||||| |||||||||||||| ||||| |
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| T |
39931653 |
aagttcccctttcttcattggtctctctttttcctttcatcttttaactc |
39931604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 548
Target Start/End: Original strand, 38187115 - 38187169
Alignment:
| Q |
494 |
aagagcatcaatgcagctcaaattgtaaacgttgttgttggaagctccaatctat |
548 |
Q |
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|||||||||| |||| |||||||||||||| |||||| ||||||||| |||||| |
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| T |
38187115 |
aagagcatcactgcaactcaaattgtaaaccttgttgaaggaagctccgatctat |
38187169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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