View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_40 (Length: 337)

Name: NF17080_low_40
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_40
NF17080_low_40
[»] chr7 (9 HSPs)
chr7 (5-317)||(48089179-48089508)
chr7 (72-174)||(8405313-8405415)
chr7 (73-229)||(24657983-24658148)
chr7 (1-138)||(10703132-10703270)
chr7 (2-138)||(10702673-10702811)
chr7 (133-315)||(33003068-33003271)
chr7 (1-57)||(1691546-1691602)
chr7 (5-53)||(24657913-24657961)
chr7 (66-109)||(33003264-33003307)
[»] chr8 (6 HSPs)
chr8 (3-229)||(18075735-18075962)
chr8 (245-315)||(18076005-18076075)
chr8 (3-53)||(11995260-11995310)
chr8 (1-49)||(34697088-34697136)
chr8 (21-53)||(7681486-7681518)
chr8 (1-53)||(44873216-44873268)
[»] chr2 (6 HSPs)
chr2 (1-229)||(40372664-40372892)
chr2 (3-229)||(2081599-2081821)
chr2 (1-148)||(6141394-6141542)
chr2 (4-138)||(18458714-18458852)
chr2 (245-314)||(40372931-40373000)
chr2 (1-51)||(34189947-34189997)
[»] chr4 (6 HSPs)
chr4 (3-149)||(2185144-2185290)
chr4 (73-157)||(2201210-2201294)
chr4 (77-128)||(54054455-54054506)
chr4 (1-53)||(4377167-4377219)
chr4 (1-53)||(36247758-36247810)
chr4 (1-41)||(54054716-54054756)
[»] chr3 (6 HSPs)
chr3 (1-149)||(8034694-8034838)
chr3 (1-149)||(7728915-7729065)
chr3 (1-52)||(38572553-38572604)
chr3 (72-109)||(30201521-30201558)
chr3 (17-53)||(23084443-23084479)
chr3 (1-53)||(24309807-24309859)
[»] chr1 (3 HSPs)
chr1 (121-199)||(36420536-36420614)
chr1 (73-149)||(42311479-42311555)
chr1 (1-53)||(39299273-39299325)
[»] chr5 (1 HSPs)
chr5 (1-53)||(7607393-7607445)
[»] chr6 (3 HSPs)
chr6 (5-53)||(33704038-33704086)
chr6 (1-53)||(35187970-35188022)
chr6 (5-52)||(21883183-21883230)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 317
Target Start/End: Original strand, 48089179 - 48089508
Alignment:
Q  5 tttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaatcaacaaatattattctcgttgagattgtgtaagaaa 104  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||        ||||||||||||||||||| |||||||||||||||||||    
T  48089179 tttaagtacatgtggagttaaaatttcaaataaataataatgcaaactaaatgttttttttaatcaacaaatattattcttgttgagattgtgtaagaaa 48089278  T
Q  105 cacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaacctaatacttagca 204  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48089279 cacaaaaactcg-ggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaacctaatacttagca 48089377  T
Q  205 atttcataaaaataaacactatgca------------------ctaaagtgacaatagaagcagctgcacaccaaaactaaggggatgagattgaaagtt 286  Q
    |||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48089378 atttcataaaaataaacactatgcacaccaaaaatacttaccgctaaagtgacaatagaagcagctgcacaccaaaactaaggggatgagattgaaagtt 48089477  T
Q  287 gagagagaggataagaagagggcaagaggtg 317  Q
    |||||||||||||||||||||||||||||||    
T  48089478 gagagagaggataagaagagggcaagaggtg 48089508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 8405415 - 8405313
Alignment:
Q  72 caaatattattctcgttgagattgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaa 171  Q
    ||||||||||||| || ||||||| |||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||||||||    
T  8405415 caaatattattcttgtcgagattgggtaataaacacaaaaactcgcggatcaaaaagtctaaaacacagtagtgtgctcttacaaagatgccaaaagcaa 8405316  T
Q  172 aag 174  Q
    |||    
T  8405315 aag 8405313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 229
Target Start/End: Original strand, 24657983 - 24658148
Alignment:
Q  73 aaatattattctcgttgagattgtgtaagaaacacaaaaactcacggatcaaatagtctaaaat--acagtagtgtgctc-------ttacaaaggtgct 163  Q
    |||| |||||||| |  ||||||||||||||||| |||||||| ||||||||||||| ||||||  ||||||||||||||       ||||||||||||     
T  24657983 aaattttattctcatcaagattgtgtaagaaacataaaaactcgcggatcaaatagtttaaaatacacagtagtgtgctcttacaagttacaaaggtgcc 24658082  T
Q  164 aaaagcaaaagaacaagcacctgccaacctaatacttagcaatttcataaaaataaacactatgca 229  Q
    |||||||||||| ||| ||| |||||||| |||||| | |||||  ||||||||||||| ||||||    
T  24658083 aaaagcaaaagagcaaacacatgccaacccaatactcaacaattctataaaaataaacattatgca 24658148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 10703270 - 10703132
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatg-nnnnnnnnaatcaacaaatattattctcgttgagattgtgta 99  Q
    |||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||         |||| ||||||||||||||||  |||||||| ||    
T  10703270 agactttaggtatatgtggagttaaaatgtcaaataaataataatgcaaactaaatgaatttttttaatcgacaaatattattctcgacgagattgtata 10703171  T
Q  100 agaaacacaaaaactcacggatcaaatagtctaaaatac 138  Q
    |||||||||||||||| |  ||||||||| |||| ||||    
T  10703170 agaaacacaaaaactcgcatatcaaatagcctaacatac 10703132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 10702673 - 10702811
Alignment:
Q  2 gactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatg--nnnnnnnnaatcaacaaatattattctcgttgagattgtgta 99  Q
    ||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||          |||| | || |||||||||||| |||||||||||    
T  10702673 gactttaggtatatgtggagctaaaatgtcaaataaataataatgcaaactaaatgatttttttttaatcgagaattattattctcgtcgagattgtgta 10702772  T
Q  100 agaaacacaaaaactcacggatcaaatagtctaaaatac 138  Q
    |||||||||||||||  |  |||||||||||||| ||||    
T  10702773 agaaacacaaaaacttgcatatcaaatagtctaacatac 10702811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 315
Target Start/End: Complemental strand, 33003271 - 33003068
Alignment:
Q  133 aaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaacctaatacttagcaatttcataaaaataaacactatgca--- 229  Q
    ||||||| |||||| ||||||||||||| | |||||||||| | |||||||||||||||  ||||||  |||||| ||||||||||||||| |||||       
T  33003271 aaatacaatagtgtcctcttacaaaggtcccaaaagcaaaaaagcaagcacctgccaactcaatactcggcaattccataaaaataaacaccatgcaaaa 33003172  T
Q  230 -----------ctaaagtgaca------atagaagcagctgcacacc-aaaactaaggggatgagattgaaagttgagagagaggataagaagagggcaa 311  Q
               ||||||| |||      ||||||||| |  |||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  33003171 aatgcttactgctaaagtaacataccacatagaagcaacatcacaccaaaaactaaggagatgagattgaaagttgagagagaggatgagaggagggcaa 33003072  T
Q  312 gagg 315  Q
    ||||    
T  33003071 gagg 33003068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1691546 - 1691602
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatg 57  Q
    |||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||    
T  1691546 agactttaggtatatgtggagctaaaatttcaaataaataataatgaaaactaaatg 1691602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 24657913 - 24657961
Alignment:
Q  5 tttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 53  Q
    ||||| || ||||||||||||||||| |||||||||||||| |||||||    
T  24657913 tttagatatatgtggagttaaaattttaaataaataataatgcaaacta 24657961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 33003307 - 33003264
Alignment:
Q  66 aatcaacaaatattattctcgttgagattgtgtaagaaacacaa 109  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||    
T  33003307 aatcaacaaatattgttctcgtcgagattgtgtaagaaatacaa 33003264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 18075735 - 18075962
Alignment:
Q  3 actttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaa-tcaacaaatattattctcgttgagattgtgtaag 101  Q
    ||||||||||||||||||  ||||||||||||||||||||||| |||||||||||         | ||||||||||||||||||||  ||||||||||||    
T  18075735 actttaggtacatgtggaactaaaatttcaaataaataataatgcaaactaaatgtttttttttagtcaacaaatattattctcgtcaagattgtgtaag 18075834  T
Q  102 aaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaacctaatactta 201  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| |    
T  18075835 aaacacaaaaactcgcggatcaaatagtctaaaatacagtagtgtgctcatacaaaggtgctaaaagcaaaagagcaagcacctgccaacccaatactca 18075934  T
Q  202 gcaatttcataaaaataaacactatgca 229  Q
     ||||| |||||||||||||||||||||    
T  18075935 acaattccataaaaataaacactatgca 18075962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 18076005 - 18076075
Alignment:
Q  245 aagcagctgcacaccaaaactaaggggatgagattgaaagttgagagagaggataagaagagggcaagagg 315  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||    
T  18076005 aagcagcagcacatcaaaactaaggggacgagattgaaagttgagagagaggatgacaagagggcaagagg 18076075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 11995310 - 11995260
Alignment:
Q  3 actttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 53  Q
    |||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  11995310 actttaggtatatgtggagctaaaattttaaataaataataatacaaacta 11995260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34697136 - 34697088
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaa 49  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  34697136 agactttaggtacatgtggagctaaaattttaaataaataatagtacaa 34697088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 7681518 - 7681486
Alignment:
Q  21 gttaaaatttcaaataaataataatacaaacta 53  Q
    |||||||||||||| ||||||||||||||||||    
T  7681518 gttaaaatttcaaagaaataataatacaaacta 7681486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44873216 - 44873268
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 53  Q
    |||||||||||||||| |||| |||||||| ||| ||| |||||| |||||||    
T  44873216 agactttaggtacatgcggagctaaaattttaaagaaacaataatgcaaacta 44873268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 40372664 - 40372892
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaatcaacaaatattattctcgttgagattgtgtaa 100  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||||| | ||||||||         ||||||||||||| |||||||| ||||||||||||    
T  40372664 agactttaggtccatgtggagctaagatttcaaataaataataatgcgaactaaatattttttttaatcaacaaatatcattctcgtcgagattgtgtaa 40372763  T
Q  101 gaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaacctaatactt 200  Q
    |||| |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||| ||| |||||||||||  ||||||     
T  40372764 gaaaaacaaaaactcacagatcaaatagtctaaaatatactagtgtgctcttacaaaggtgcaaaaagcaaaagagcaaacacctgccaactcaatactc 40372863  T
Q  201 agcaatttcataaaaataaacactatgca 229  Q
    ||||||| |||||||||||||||||||||    
T  40372864 agcaattccataaaaataaacactatgca 40372892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 2081821 - 2081599
Alignment:
Q  3 actttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaatcaacaaatattattctcgttgagattgtgtaaga 102  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||  |         |||| ||||||||||||||||| |||||||| |||||    
T  2081821 actttaggtacatgtggagctaaaatttcaaataaatgataatgcaaactactt----tatttaatcgacaaatattattctcgtcgagattgtctaaga 2081726  T
Q  103 aacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaacctaatacttag 202  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||||||  |    
T  2081725 aacacaaaaactcgcggatcaaatagtctaaaatacggtagtgtgctcttacagaggtgccaaaagcaaaagagcaagcacctgccaacccaatactcgg 2081626  T
Q  203 caatttcataaaaataaacactatgca 229  Q
    ||||| |||||||||||||||||||||    
T  2081625 caattccataaaaataaacactatgca 2081599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 6141394 - 6141542
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnn-aatcaacaaatattattctcgttgagattgtgta 99  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||          |||| ||||||||||||||||| |||||||||||    
T  6141394 agactttaggtacatgtggagctaaaatttcaaataaataataatgcaaaccaaatctatttttttaatcgacaaatattattctcgtcgagattgtgta 6141493  T
Q  100 agaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgc 148  Q
    |||||||||||||||| |  ||||||||||| || ||||| ||||||||    
T  6141494 agaaacacaaaaactcgcaaatcaaatagtcgaacatacactagtgtgc 6141542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 18458714 - 18458852
Alignment:
Q  4 ctttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnn----aatcaacaaatattattctcgttgagattgtgta 99  Q
    ||||||||| |||||||| |||||| |||||||||||||||| |||||||| ||            |||  ||||||||||||||||| |||||||||||    
T  18458714 ctttaggtatatgtggagctaaaatgtcaaataaataataatgcaaactaagtgaattttttttttaatttacaaatattattctcgtcgagattgtgta 18458813  T
Q  100 agaaacacaaaaactcacggatcaaatagtctaaaatac 138  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  18458814 agaaacacaaaaactcacagatcaaatagtctaacatac 18458852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 40372931 - 40373000
Alignment:
Q  245 aagcagctgcacaccaaaactaaggggatgagattgaaagttgagagagaggataagaagagggcaagag 314  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||    
T  40372931 aagcagcaacacaccaaaactaaggggatgagattgaaagttgagagtgaggatgagaagaggacaagag 40373000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34189947 - 34189997
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaac 51  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  34189947 agactttaggtatatgtggagttaaaattttaaataaataataatacaaac 34189997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 2185144 - 2185290
Alignment:
Q  3 actttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaatcaacaaatattattctcgttgagattgtgtaaga 102  Q
    |||||||||| |||||||| ||||||||||||||||||||||  |||||||||||        |||| |||||||||||||| |||||||||||||||||    
T  2185144 actttaggtatatgtggagctaaaatttcaaataaataataactcaaactaaatgttttttttaatcgacaaatattattcttgttgagattgtgtaaga 2185243  T
Q  103 aacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgct 149  Q
    ||||||||||||| | ||||||||||||||| ||| |||||||||||    
T  2185244 aacacaaaaactcgcagatcaaatagtctaacatatagtagtgtgct 2185290  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 2201294 - 2201210
Alignment:
Q  73 aaatattattctcgttgagattgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaa 157  Q
    |||||||||||| || |||||||||||||||||||||||| |  | ||||||||||||||||||||||||| |||||||||||||    
T  2201294 aaatattattcttgtcgagattgtgtaagaaacacaaaaatttgcagatcaaatagtctaaaatacagtagcgtgctcttacaaa 2201210  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 54054506 - 54054455
Alignment:
Q  77 attattctcgttgagattgtgtaagaaacacaaaaactcacggatcaaatag 128  Q
    |||| |||||| ||||||||||||||||||||||||||| || |||||||||    
T  54054506 attaatctcgtcgagattgtgtaagaaacacaaaaactcgcgcatcaaatag 54054455  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4377167 - 4377219
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 53  Q
    ||||||||||||||||||||| || ||||||||| ||| |||||| |||||||    
T  4377167 agactttaggtacatgtggagctataatttcaaagaaacaataatgcaaacta 4377219  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36247758 - 36247810
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 53  Q
    ||||||||||||||||||||| |||||||| ||| ||| |||||| |||||||    
T  36247758 agactttaggtacatgtggagctaaaattttaaagaaacaataatgcaaacta 36247810  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 54054756 - 54054716
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataa 41  Q
    |||||||| |||||| ||||| |||||||||||||||||||    
T  54054756 agactttaagtacatatggagctaaaatttcaaataaataa 54054716  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 8034694 - 8034838
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaatcaacaaatattattctcgttgagattgtgtaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |         |||| ||||||||||||||||| ||||||||||||    
T  8034694 agactttaggtacatgtggagctaaaatttcaaataaataataatgcaaactaatt----tttttaatcgacaaatattattctcgtcgagattgtgtaa 8034789  T
Q  101 gaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgct 149  Q
    |||||||||||| || | ||||||||||||||| ||||| |||||||||    
T  8034790 gaaacacaaaaattcgcagatcaaatagtctaacatacaatagtgtgct 8034838  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 7729065 - 7728915
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnn-----aatcaacaaatattattctcgttgagattg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||     ||||||||||             ||||||||||||||||| ||||||||||||    
T  7729065 agactttaggtacatgtggagttaaaatttcaaataaataatgt---aaactaaatgtatttttttttataatcaacaaatattattatcgttgagattg 7728969  T
Q  96 tgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgct 149  Q
    |||||||||||||||||| | | ||||||||||||||||||||| |||||||||    
T  7728968 tgtaagaaacacaaaaacccgcagatcaaatagtctaaaatacactagtgtgct 7728915  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38572553 - 38572604
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaact 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  38572553 agactttaggtacatgtggagataaaatttcaaataaataataaaacaaact 38572604  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 30201521 - 30201558
Alignment:
Q  72 caaatattattctcgttgagattgtgtaagaaacacaa 109  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  30201521 caaatattattctctttgaaattgtgtaagaaacacaa 30201558  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 23084479 - 23084443
Alignment:
Q  17 tggagttaaaatttcaaataaataataatacaaacta 53  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  23084479 tggagctaaaattttaaataaataataatacaaacta 23084443  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24309807 - 24309859
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 53  Q
    |||||||||||||||| | || |||||||||||| ||| |||||| |||||||    
T  24309807 agactttaggtacatgcgaagctaaaatttcaaagaaacaataatgcaaacta 24309859  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 36420536 - 36420614
Alignment:
Q  121 tcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaacctaatact 199  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||||||||    
T  36420536 tcaaatagtctaaaatacagtagtgtgctcttacaaaggtgccaaaagcaaaagagcaagcaactaccaacctaatact 36420614  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 42311555 - 42311479
Alignment:
Q  73 aaatattattctcgttgagattgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgct 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||    
T  42311555 aaatattattctcgtcgagattgtgtaagaaacacaaaaactcgcagatcaaatagtctaatatacagtagtgtgct 42311479  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39299325 - 39299273
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 53  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||| |||||||    
T  39299325 agactttaggtacatgtggagttaaaattttaaaaaaacaataatgcaaacta 39299273  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7607445 - 7607393
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7607445 agactttaggtacatgtggagctaaaatttcaaataaataataatacaaacta 7607393  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 33704038 - 33704086
Alignment:
Q  5 tttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 53  Q
    |||||||| |||||| | |||||||||||||||||||||||||||||||    
T  33704038 tttaggtatatgtgggggtaaaatttcaaataaataataatacaaacta 33704086  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35187970 - 35188022
Alignment:
Q  1 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 53  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||    
T  35187970 agactttaggttcatgtggagctaaaattttaaataaataataatataaacta 35188022  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 21883183 - 21883230
Alignment:
Q  5 tttaggtacatgtggagttaaaatttcaaataaataataatacaaact 52  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||    
T  21883183 tttaggtacatgtggaactaaaattttaaataaataataatacaaact 21883230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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