View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_41 (Length: 337)
Name: NF17080_low_41
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 40 - 192
Target Start/End: Original strand, 2612959 - 2613110
Alignment:
| Q |
40 |
actttacctttatcagtgtccaaatcatcagtggtgttaataggtgaaatgataggtgaaagaataaaatcaccaagtatannnnnnngcaggtggagca |
139 |
Q |
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| T |
2612959 |
actttacctttatcagtgtccaaatcatcagtggtggtaataggtgaaatgataggtgaaagaataaaatcaccaagtata-ttttttgcaggtggagca |
2613057 |
T |
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| Q |
140 |
ttattttaacttttgaatgaaatttattttattgtaaaaagatacttaaaatc |
192 |
Q |
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| T |
2613058 |
ttattttaacttttgaatgaaatttattttattgtaaaaagatacttaaaatc |
2613110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 2612817 - 2612781
Alignment:
| Q |
2 |
acagaccctgttagaggctcatcctgaagtgcacgaa |
38 |
Q |
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| T |
2612817 |
acagactctgttagaggctcatcctgaagtgcacgaa |
2612781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 52315711 - 52315658
Alignment:
| Q |
64 |
tcatcagtggtgttaataggtgaaatgataggtgaaagaataaaatcaccaagt |
117 |
Q |
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| T |
52315711 |
tcatcagtggtggtaataggtgaaatgataggtgaaagaataaagtcaccaagt |
52315658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 34106901 - 34106953
Alignment:
| Q |
64 |
tcatcagtggtgttaataggtgaaatgataggtgaaagaataaaatcaccaag |
116 |
Q |
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| T |
34106901 |
tcatcagtggtggtaataggggcagtgataggtgagagaataaaatcaccaag |
34106953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 13128766 - 13128714
Alignment:
| Q |
64 |
tcatcagtggtgttaataggtgaaatgataggtgaaagaataaaatcaccaag |
116 |
Q |
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| T |
13128766 |
tcatcagtcatggtaataggggcaatgataggtgagagaataaaatcaccaag |
13128714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 8858830 - 8858779
Alignment:
| Q |
64 |
tcatcagtggtgttaataggtgaaatgataggtgaaagaataaaatcaccaa |
115 |
Q |
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| T |
8858830 |
tcatcagtggtggtaataggtgaaatcataggtgagagaataaaatcaccaa |
8858779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 21202909 - 21202866
Alignment:
| Q |
64 |
tcatcagtggtgttaataggtgaaatgataggtgaaagaataaa |
107 |
Q |
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| T |
21202909 |
tcatgagtggtggtaataggggaaatgataggtgaaagaataaa |
21202866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 41309529 - 41309477
Alignment:
| Q |
64 |
tcatcagtggtgttaataggtgaaatgataggtgaaagaataaaatcaccaag |
116 |
Q |
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|||||||||||| ||||| | |||||||||||| ||||||||||||||||| |
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| T |
41309529 |
tcatcagtggtggtaataaaggcaatgataggtgagagaataaaatcaccaag |
41309477 |
T |
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