View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_42 (Length: 334)
Name: NF17080_low_42
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 37324684 - 37324383
Alignment:
| Q |
17 |
agagaaatagaatttgcaataatgaaaacgtggtggctggctgattatttgactaggagtgtaagagtattgttactcacgatgcaagacttccactcat |
116 |
Q |
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| T |
37324684 |
agagaaatagaatttgcaataatgaaatagtggtggctggctgattatttgactaggagtgtaagagtattgttactcacgatgcaagacttccactcat |
37324585 |
T |
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| Q |
117 |
ctccttgatcaggaagttggcggaatatgtgaacaagtacaacagcatccagggcagcatattcaagctgtacatatagaaccgtgttagattattgaat |
216 |
Q |
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| T |
37324584 |
ctccttgatcaggaagttggcggaatatgtgaacaagtacaacagcatccagggcagcatattcaagctgtaaatatagaaccgtgttagattattgaat |
37324485 |
T |
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| Q |
217 |
gagatggttcaaatggattgtaatataaatatactgaaaagctcctttacaatataaggaagttaaatgaatttacagtgtaaaccttttacacttgaca |
316 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37324484 |
gagatggttcaaatggattgtattataaatatactgaaaagctcctttacaatataaggaagttaaatgaatttacagtgtaaaccttttacacttgaca |
37324385 |
T |
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| Q |
317 |
tt |
318 |
Q |
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|| |
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| T |
37324384 |
tt |
37324383 |
T |
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