View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_43 (Length: 330)
Name: NF17080_low_43
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 88 - 316
Target Start/End: Complemental strand, 8344405 - 8344177
Alignment:
| Q |
88 |
tactgttggggctagaaacttttgctgtgttttcttattttataattaaaagaatgtgtaagaaaaaagccaaaagggtatgcttcaattcctaatgttt |
187 |
Q |
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| T |
8344405 |
tactgtttgggctagaaaattttgctgtgttttcttattttatcattaaaagaatgtgtaagaaaaaagccaaaagggtatgcttcaatttctaatgttt |
8344306 |
T |
|
| Q |
188 |
tactttttcttcaggtggttgtgctatatgccatggaagggaggtaaaagaaagggagcacagggagagtggtggaggagatcatctataatgacctgga |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
8344305 |
tactttttcttcaggtggttgtgctatatgccatggaagggaggtaaaagaaagggagcacatggagagtggtggaggagatcatctataatgacctaga |
8344206 |
T |
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| Q |
288 |
aaacaaaacaactcagattttcaataatg |
316 |
Q |
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| T |
8344205 |
aaacaaaacaactcagattttcaataatg |
8344177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 88 - 310
Target Start/End: Complemental strand, 8347154 - 8346931
Alignment:
| Q |
88 |
tactgttggggctagaaacttttgctgtgttttcttattttataattaaaagaatgtgtaagaaaaaa-gccaaaagggtatgcttcaattcctaatgtt |
186 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8347154 |
tactgttggggctagaaaattttgctgtgttttcatattttatcattaaaagaatgtgtaagaaaaaaagccaaaagggtatgcttcaattcctaatgtt |
8347055 |
T |
|
| Q |
187 |
ttactttttcttcaggtggttgtgctatatgccatggaagggaggtaaaagaaagggagcacagggagagtggtggaggagatcatctataatgacctgg |
286 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
8347054 |
ttactttttctctaggtcgttgtgctatatgccatggaagggaggtaaaagaaagggagcacattgagagtggtggaggagatcatctataatgacctag |
8346955 |
T |
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| Q |
287 |
aaaacaaaacaactcagattttca |
310 |
Q |
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|||||||||||||||||||||||| |
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| T |
8346954 |
aaaacaaaacaactcagattttca |
8346931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 88 - 310
Target Start/End: Complemental strand, 8330640 - 8330420
Alignment:
| Q |
88 |
tactgttggggctagaaacttttgctgtgttttcttattttataattaaaagaatgtgtaagaaaaaagccaaaagggtatgcttcaattcctaatgttt |
187 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||| || ||||||||||| ||||||||||| || ||| |||||| ||||||||||||||||| |
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| T |
8330640 |
tactgttggggctagaaaattttgctttgttttcttattt-atcattaaaagaatttgtaagaaaaa-gcttaaaaggtatggttcaattcctaatgttt |
8330543 |
T |
|
| Q |
188 |
tactttttcttcaggtggttgtgctatatgccatggaagggaggtaaaagaaagggagcacagggagagtggtggaggagatcatctataatgacctgga |
287 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
8330542 |
tactttttctccaggtggttgtgctatatgccatggaagggaggtaaaagaaagggagcacagggagagtggtggaagagatcatctataatgacctaga |
8330443 |
T |
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| Q |
288 |
aaacaaaacaactcagattttca |
310 |
Q |
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||||||||||||||||||||||| |
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| T |
8330442 |
aaacaaaacaactcagattttca |
8330420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 8344477 - 8344445
Alignment:
| Q |
16 |
caggaatcgtgttgggtttgcttattataagta |
48 |
Q |
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| T |
8344477 |
caggaatcgtgttgggtttgcttattataagta |
8344445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 8347224 - 8347192
Alignment:
| Q |
16 |
caggaatcgtgttgggtttgcttattataagta |
48 |
Q |
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| T |
8347224 |
caggaatcgtgttgggtttgcttattataagta |
8347192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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