View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_46 (Length: 323)
Name: NF17080_low_46
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 626903 - 626606
Alignment:
| Q |
12 |
agaatataactcctaaaaaaccttaatcttgcattatgacataattaaccactaatttacatcaaatttcttgaattagtcagggatatttcctcaatcc |
111 |
Q |
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| T |
626903 |
agaatataactcctaaaaaaccttaatcttgcattatgacataattaaccactaatttacatcaaatttcttgaattagtcagggatatttcctcaatcc |
626804 |
T |
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| Q |
112 |
tcaaaccccaaaatgtaacagaaatggtat---atatcagcatcaaaatcataactgatcataagctatttctgccatgtgcattaaaggcttaaagcaa |
208 |
Q |
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| T |
626803 |
tcaaaccccaaaatgtaacagaaattgtattatatatcagcatcaaaatcataactgatcataagctatttctgccatgtgcattaaaggcttaaagcaa |
626704 |
T |
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| Q |
209 |
catccttaagataagtgaacatcatgtcattagtttcttgctgtaaagtttgtcttttatgtgttgccaggctctttctcagttcttaggaccatcat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
626703 |
catccttaagataagtgaacatcatgtcattagtttcttgctgtaaagtttgtcttttatgtgttgccaggctctttctcagttcttaggaccatcat |
626606 |
T |
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