View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17080_low_47 (Length: 321)
Name: NF17080_low_47
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_47 |
 |  |
|
| [»] scaffold0418 (1 HSPs) |
 |  |  |
|
| [»] scaffold0029 (1 HSPs) |
 |  |  |
|
| [»] scaffold0002 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 166 - 306
Target Start/End: Complemental strand, 2041345 - 2041205
Alignment:
| Q |
166 |
aatatagagaatattactttccctaactctctcttatgaattctctcaatattttagtttcctagctattacgataccttcagcaatcgctccnnnnnnn |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2041345 |
aatatagagaatattactttccctaactctctcttatgaattctctcaatattttagtttcctagctattacgataccttcagcaatcgctccaaaaaaa |
2041246 |
T |
 |
| Q |
266 |
gttcaaccaccactggagtcccaacgaggagctggaggagg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2041245 |
gttcaaccaccactggagtcccaacgaggagctggaggagg |
2041205 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 43627411 - 43627561
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| | | |||| ||| ||||||||||||||||||||||| |
|
|
| T |
43627411 |
caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccacaatcagcaacacgcgaagacatgtcaggcgacaacacccgtctagcaat |
43627510 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
43627511 |
caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac |
43627561 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 33547784 - 33547934
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| ||| | |||||||||||||| |||||| |
|
|
| T |
33547784 |
caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaacacacaaagacatgtcagacgacaacacccgtcgagcaat |
33547883 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||||||||| |
|
|
| T |
33547884 |
caaatttgtccttgttgataaacgatcacggaggagcctccacgcaaaaac |
33547934 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 22052539 - 22052689
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||| |||||| || ||| |||||||| ||||||||| |
|
|
| T |
22052539 |
caaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaacacacgaggacatatcaggcaccaacacccttctagcaat |
22052638 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
22052639 |
caaatttgtccttgttggtaaacgatcacggatgagcctccacgcgaaaac |
22052689 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 31085854 - 31085715
Alignment:
| Q |
25 |
cacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtcc |
124 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||| || || |||||||||||| |||||| ||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
31085854 |
cacaataaaaagagatgttgtgccgtttcaggatgtccgcacccagcaacacacgaggacatgtcagacgacagcacccgtctagcaatcaaatttgtct |
31085755 |
T |
 |
| Q |
125 |
ttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
31085754 |
ttcttggtaaacgatcacggatgagcctccacgcaaaaac |
31085715 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 13550036 - 13550178
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||| |||||||||||| |||||| | |||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
13550036 |
caaaagtattacacaataaaaagagatgttgcaccgattcaggatgaccacaaccagtaacacacgaggacatgtcatgcgacaacacccgtctagcaat |
13550135 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccac |
156 |
Q |
| |
|
|||||| |||||| || |||||||||| |||| ||||| |||| |
|
|
| T |
13550136 |
caaattagtccttgttggtaaacgatctcggatgagcctccac |
13550178 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 9949492 - 9949342
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||||||||||||| |||| || || ||| | |||||||||||||||||||| |||||||||||| | |||| ||| ||||| | ||||||||||| ||| |
|
|
| T |
9949492 |
caaaggtatcacacgataagaaaaggtgttgggccgattcaggatgaccacacccagcaacacacgaagacatgtcaggcgatagcacccgtctagaaat |
9949393 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||| |||| | ||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
9949392 |
caaatttaaccttgtcggtaaacggtcacgaaggagcctccacgcaaaaac |
9949342 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 26180149 - 26180005
Alignment:
| Q |
19 |
gtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaat |
118 |
Q |
| |
|
|||| |||||||||||| || ||| ||| || ||||||||| | || ||||||| ||| ||| | | ||| ||||||| ||||| ||||||||| |||| |
|
|
| T |
26180149 |
gtattacacaataaaaagaggtgttgtgtcgtttcaggatgtctgcacccagcaatacaaaagcaaatgtcaggcgacagcaccc-tctagcaattaaat |
26180051 |
T |
 |
| Q |
119 |
ttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|| || || || |||| |||||||||| |||| |||||||||||| |
|
|
| T |
26180050 |
ttatctttgttggtaaccgatcacggatgagcatccacgcaaaaac |
26180005 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 45421463 - 45421533
Alignment:
| Q |
46 |
gccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaa |
116 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||| || | || |||||||| || ||||||||| |
|
|
| T |
45421463 |
gccgattcaggatgaccgcaaccagcgacacataaggacatatcagtcggcaacacccttcgagcaatcaa |
45421533 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 2044687 - 2044655
Alignment:
| Q |
173 |
agaatattactttccctaactctctcttatgaa |
205 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
2044687 |
agaatattactttccctaactttctcttatgaa |
2044655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 16421238 - 16421088
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
16421238 |
caaaagtatcacacaacaaaaatagacgtcgtgccgattcaggatgaccacagccagcaacacacgaggacatgtccggcgacaacacccgtctagcaat |
16421139 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
16421138 |
caaatttgtccttgttggtaaacgatcacggaggagccgccacgcaaaaac |
16421088 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 2872102 - 2872252
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |||| || ||||||||||||||||||||||| |
|
|
| T |
2872102 |
caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccacaatcagcaacacacgaagacatatcaggcgacaacacccgtctagcaat |
2872201 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
2872202 |
caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac |
2872252 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 35405627 - 35405767
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
35405627 |
acacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtc |
35405726 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|| || ||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
35405727 |
tttgttggtaaacgatcacggatgagcctccacgcgaaaac |
35405767 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 412585 - 412502
Alignment:
| Q |
19 |
gtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacc |
102 |
Q |
| |
|
||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||| |||||| || | |||||||||| |
|
|
| T |
412585 |
gtatcacacaataaatagagatgttgagccgattcaggatgaccacaaccagcaacacacgaggacatatcagacgacaacacc |
412502 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 7452274 - 7452369
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatt |
119 |
Q |
| |
|
|||||| | ||| |||||| | |||| |||||||||||| |||||||| ||||| ||||||| || ||| |||||||||||| |||||||||||| |
|
|
| T |
7452274 |
acacaacagaaagagatgttgagccgtttcaggatgaccgcaaccagcgacacataaggacatatcaggcaacaacacccgtcgagcaatcaaatt |
7452369 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 19384938 - 19384788
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||| |||||| || ||||||||| | |||| ||| |||||||| |||||||| ||||| ||||||| ||| ||| |||||||||| |||||| |
|
|
| T |
19384938 |
caaaagtattacacaacaagaatagatgttgggccgtttccggatgaccgcaaccagcgacacataaggacatgtcattcgataacacccgtcgagcaat |
19384839 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|||||| ||| | | |||||||||| |||| ||| | ||| |||||||| |
|
|
| T |
19384838 |
caaattagtcttcgtcggtaaacgatctcggaagagtctccatgcaaaaac |
19384788 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 3692539 - 3692689
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
3692539 |
caaaagtatcacgcaataaaaatagatgtcgtgccgattcaggatgaccacagccagcaacacacgaggacatgtccggcgacaacacccgtctagcaat |
3692638 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| ||||||||| |
|
|
| T |
3692639 |
caaatttgtccttgttggtaaacgatcacggaggagccgccgcgcaaaaac |
3692689 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 14119682 - 14119835
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||| |||||||||||| |||||| | |||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
14119682 |
caaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccaacaacacacgaggacatgtcaggcgacaacacccgtctagcaat |
14119781 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaacaaa |
167 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
14119782 |
caaatttgtccttgttggtaaacgatcacggatgagcctccacgcgaaaacaaa |
14119835 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 32353525 - 32353375
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| | | |||| ||| ||||||||||||||||||||||| |
|
|
| T |
32353525 |
caaaagtatcacacattaaaaatagatgtcgatccgattcaggatgaccacattcagcaacactcgaagacatgtcaggcgacaacacccgtctagcaat |
32353426 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
32353425 |
caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac |
32353375 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 48073659 - 48073509
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| | |||| ||| | |||||||||||||| |||||| |
|
|
| T |
48073659 |
caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgtagccagcaacacacgaagacatgtcagacgacaacacccgtcgagcaat |
48073560 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||||||||| |
|
|
| T |
48073559 |
caaatttgtccttgttgttaaacgatcacggaggagcctccacgcaaaaac |
48073509 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 37530478 - 37530628
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| | ||||||||||| ||| |
|
|
| T |
37530478 |
caaaggtatcacacaataaaaaaaggtgttgtgccgattcaggatgaccacaaccagcaacgcacgaggacatgtcaggcgatagcacccgtctagaaat |
37530577 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|||||| |||||| | |||||| ||||| ||||||| |||||||||||| |
|
|
| T |
37530578 |
caaattcgtccttgtcgataaacggtcacgaaggagcctccacgcaaaaac |
37530628 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 36305706 - 36305846
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||| ||||| |||||| | |||| |||||||||| | |||||||| ||||| ||||||| || |||||||||||| ||| |||||||||||| ||| |
|
|
| T |
36305706 |
acacaacaaaaagagatgttgagccgtttcaggatgatcgcaaccagcgacacataaggacatatcaggcgacaacacctgtcgagcaatcaaattagtc |
36305805 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
| || |||| ||||| | |||||| | |||||||||||| |
|
|
| T |
36305806 |
ttcattggtaaccgatccctgaggagtctccacgcaaaaac |
36305846 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 36929089 - 36929184
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatt |
119 |
Q |
| |
|
|||||| ||||| |||||| | ||| |||||||||||| |||||||| ||||| ||||||| || ||| ||||||| |||| |||||||||||| |
|
|
| T |
36929089 |
acacaacaaaaagagatgttgagccatttcaggatgaccgcaaccagcgacacataaggacatatcaggcaacaacactcgtcgagcaatcaaatt |
36929184 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 48265936 - 48265796
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||| ||||| |||| | | |||| ||| |||||||| |||| ||| ||||| ||||||| ||| ||| |||||||||| |||||||||||| ||| |
|
|
| T |
48265936 |
acacaacaaaaaaagatattgggccgtttctggatgaccgcaactagcgacacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtc |
48265837 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|| | |||||||||| ||||||| | ||| |||||||| |
|
|
| T |
48265836 |
tttgtcggtaaacgatcctggaggagtctccaagcaaaaac |
48265796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 29309320 - 29309470
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
29309320 |
caaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacagcacccgtctagcaat |
29309419 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||| ||||||||| || ||||||||||||||||||||||||||| |||||| |
|
|
| T |
29309420 |
caagtttgtccttgttggtaaacgatcacggaggagccgccacgtaaaaac |
29309470 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 2813728 - 2813578
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
2813728 |
caaaagtatcgcacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacagcacccgtctagcaat |
2813629 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
2813628 |
caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac |
2813578 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 6176701 - 6176555
Alignment:
| Q |
19 |
gtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaat |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
6176701 |
gtatcacacaataaaaatagatggcgtgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacaacacccgtctagcaatcaaat |
6176602 |
T |
 |
| Q |
119 |
ttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaaca |
165 |
Q |
| |
|
| |||||| || ||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
6176601 |
tagtccttgttggtaaacgatcacggatgagcctccatgcaaaaaca |
6176555 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 7146953 - 7147103
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |||| ||| ||||||||||||||||||||||| |
|
|
| T |
7146953 |
caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccacaatcagcaacacacgaagacatgtcaggcgacaacacccgtctagcaat |
7147052 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
7147053 |
caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac |
7147103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 23601685 - 23601836
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | |||| ||| ||||||||||||||||||||||| |
|
|
| T |
23601685 |
caaaagtatcacacaataaaaatagatgtcgaaccgattcaggatgaccacaaacagcaacacacgaagacatgtcaggcgacaacacccgtctagcaat |
23601784 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaaca |
165 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
23601785 |
caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaaca |
23601836 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 14904379 - 14904245
Alignment:
| Q |
29 |
ataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtccttct |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| ||| ||| |||||||||||||||||||||||||||| | |
|
|
| T |
14904379 |
ataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacatacgaggacatgtcaggcaacagcacccgtctagcaatcaaatttgtccttgt |
14904280 |
T |
 |
| Q |
129 |
tagtaaacgatcacggaggagccgccacgcaaaaa |
163 |
Q |
| |
|
| ||||||||||||||| ||||| | ||||||||| |
|
|
| T |
14904279 |
tggtaaacgatcacggatgagcctcaacgcaaaaa |
14904245 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 25873339 - 25873188
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaata-gatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaa |
112 |
Q |
| |
|
|||||||||||||| ||||||| | | ||| |||||||||||||||||||||| |||||||||||| | |||| ||| |||| ||||||||||||| || |
|
|
| T |
25873339 |
caaaggtatcacacgataaaaaaaaggtgttgtgccgattcaggatgaccacacccagcaacacacgaagacatgtcaagcgataacacccgtctagaaa |
25873240 |
T |
 |
| Q |
113 |
tcaaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|||||||| ||||| | ||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
25873239 |
tcaaatttatccttgtcggtaaacggtcacgaaggagcctccacgcaaaaac |
25873188 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 9379019 - 9379159
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||||||||| || ||| |||||| ||||||||||||||||||| ||| ||||||||||| || | |||||||||| ||||| ||||||||||||| |
|
|
| T |
9379019 |
acacaataaaaagaggtgttgtgccgtttcaggatgaccacaaccatcaatacacaaggacatgtaagacgacaacacctgtctaacaatcaaatttgtt |
9379118 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|| || |||||||||||| || ||||| |||||||||||| |
|
|
| T |
9379119 |
tttgttggtaaacgatcacagatgagcctccacgcaaaaac |
9379159 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 49732119 - 49732010
Alignment:
| Q |
55 |
ggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtccttcttagtaaacgatcacggaggagccgcc |
154 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||| ||| ||| |||||||||| |||||||||||| ||| || | |||||||||| |||||||| | || |
|
|
| T |
49732119 |
ggatgaccgcaaccagcgacacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatcccggaggagtctcc |
49732020 |
T |
 |
| Q |
155 |
acgcaaaaac |
164 |
Q |
| |
|
| |||||||| |
|
|
| T |
49732019 |
aagcaaaaac |
49732010 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 30167541 - 30167423
Alignment:
| Q |
46 |
gccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtccttcttagtaaacgatcacgga |
145 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| ||||| | || | || |||||||| || ||||||||| || ||| | || |||| |||||||||| |
|
|
| T |
30167541 |
gccgattcaggctgaccgcaaccagcgacacataaggagatatcagtcggcaacacccttcgagcaatcaagttagtcttcgttggtaatcgatcacgga |
30167442 |
T |
 |
| Q |
146 |
ggagccgccacgcaaaaac |
164 |
Q |
| |
|
|||| | |||||||||||| |
|
|
| T |
30167441 |
ggagtctccacgcaaaaac |
30167423 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 8487209 - 8487058
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
8487209 |
caaaagtatcacacaataaaaatagatggcgtgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacaacacccgtctagcaat |
8487110 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaaca |
165 |
Q |
| |
|
||||||||||||| || || |||||||||||| ||||| ||||||||||||| |
|
|
| T |
8487109 |
caaatttgtccttgttggttaacgatcacggatgagcctccacgcaaaaaca |
8487058 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 2631310 - 2631460
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
2631310 |
caaaagtatcacacaataaaaatagatgtcgtgccgactcaggatgaccacatccaccaacacacgaggacatgtctggcgacaacacccgtctagcaat |
2631409 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
2631410 |
caaatttgtccttgttggtaaacgatcacggaggagccgccacacaaaaac |
2631460 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 20674934 - 20675084
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||| | ||||| ||||||||| |
|
|
| T |
20674934 |
caaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacgaagacatgtcaggcgaaagcacccatctagcaat |
20675033 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
20675034 |
caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac |
20675084 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 23873704 - 23873554
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| | |||| ||| | |||||||||||||| |||||| |
|
|
| T |
23873704 |
caaaagtatcacacaataaaaatagatgacgagccgattcaggatgaccgcaaccagcaacacacgaagacatgtcagacgacaacacccgtcgagcaat |
23873605 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
23873604 |
caaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaac |
23873554 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 55298532 - 55298682
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| | |||| ||| | |||||||||||||| |||||| |
|
|
| T |
55298532 |
caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaacacacgaagacatgtcagacgacaacacccgtcgagcaat |
55298631 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
55298632 |
caaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaac |
55298682 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 3130197 - 3130057
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||| ||||| |||||| | |||| ||| |||||||| |||||||| ||||| || |||| ||| ||| |||||||||| |||||||||||| ||| |
|
|
| T |
3130197 |
acacaacaaaaagagatgttgggccgtttctggatgaccgcaaccagctacacataaagacatgtcattcgataacacccgtcgagcaatcaaattagtc |
3130098 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|| | |||||||||| |||||||| | ||| |||||||| |
|
|
| T |
3130097 |
tttgtcggtaaacgatctcggaggagtctccaagcaaaaac |
3130057 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 7663435 - 7663317
Alignment:
| Q |
46 |
gccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtccttcttagtaaacgatcacgga |
145 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||| || | || |||||||| || ||||||||| || ||| | || |||||||||| |||| |
|
|
| T |
7663435 |
gccgattcaggatgaccgcaaccagcgacacataaggacatatcagtcggcaacacccttcgagcaatcaagttagtcttcgttggtaaacgatctcgga |
7663336 |
T |
 |
| Q |
146 |
ggagccgccacgcaaaaac |
164 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
7663335 |
tgagtctccacgcaaaaac |
7663317 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 8655291 - 8655151
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||| ||||||| |||||| | |||| ||| |||||||||||||||| ||||| ||||||| || |||| |||||||| | |||||||||||| || |
|
|
| T |
8655291 |
acacgataaaaagagatgttgagccgtttccagatgaccacaaccagcgacacataaggacatgtgatgcgataacacccgacgagcaatcaaattaatc |
8655192 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|| || |||| ||||| ||||||| | ||| |||||||| |
|
|
| T |
8655191 |
tttgttggtaaccgatcctggaggagtctccaagcaaaaac |
8655151 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 23279529 - 23279669
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||||||||| |||||| ||| || |||||| ||||| || ||| ||||||| |||||||| || ||||| |||||||| | ||| |||||| ||| |
|
|
| T |
23279529 |
acacaataaaaagagatgttgtgtcgtttcaggttgaccgcagccaacaacacataaggacaaatcattcgacagcacccgtcgatcaaccaaattagtc |
23279628 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|| || |||| ||||| ||||| || | |||| ||||||| |
|
|
| T |
23279629 |
tttgttggtaatcgatcccggagaagtctccacacaaaaac |
23279669 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 47540847 - 47540963
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||| || ||||||||| | |||| ||| |||||||| || ||||| ||||| ||||||| ||| ||| |||||||||| |||||||||||| ||| |
|
|
| T |
47540847 |
acacaacaagaatagatgttgggccgtttccggatgaccgcatccagcgacacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtc |
47540946 |
T |
 |
| Q |
124 |
cttcttagtaaacgatc |
140 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
47540947 |
ttcgtcagtaaacgatc |
47540963 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 23347694 - 23347544
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| ||||||||||||||| |
|
|
| T |
23347694 |
caaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgatggcacccgtctagcaat |
23347595 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
23347594 |
caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac |
23347544 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 15673737 - 15673887
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
15673737 |
caaaagtatcacacaataaaaataaatgtcgtgccgattcaggatgaccacaaccagcaacacaagaggacatgtcaggcgacaacacccttctagcaat |
15673836 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || |||||||||| |||| ||||| |||||||||||| |
|
|
| T |
15673837 |
caaatttgtccttgttggtaaacgatcccggatgagcctccacgcaaaaac |
15673887 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 25317766 - 25317916
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
25317766 |
caaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacaacacccgtctagcaat |
25317865 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|||||| |||||| || |||||||||| |||| ||||| |||||||||||| |
|
|
| T |
25317866 |
caaattagtcctttttggtaaacgatctcggatgagcctccacgcaaaaac |
25317916 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 26205260 - 26205410
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
26205260 |
caaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacaacacccgtctagcaat |
26205359 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|||||| |||||| || |||||||||| |||| ||||| |||||||||||| |
|
|
| T |
26205360 |
caaattagtcctttttggtaaacgatctcggatgagcctccacgcaaaaac |
26205410 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 8873046 - 8872904
Alignment:
| Q |
22 |
tcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttg |
121 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
8873046 |
tcacacaataaaaaaggatgatgtgccgattcgggatgaccacaaccagcaacgcacgaggacatgtcaggcgacaacacccgtctagaaatcaaatttg |
8872947 |
T |
 |
| Q |
122 |
tccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||| | |||||||||||| | ||||| |||||| ||||| |
|
|
| T |
8872946 |
tccttgtcggtaaacgatcacaaatgagcctccacgcgaaaac |
8872904 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 1682962 - 1683102
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||| ||||| |||||| | |||| ||| | |||||| |||||||| ||||| ||||||| ||| ||| |||||||||| |||||||||||| ||| |
|
|
| T |
1682962 |
acacaacaaaaagagatgttgggccgtttccgaatgaccgcaaccagcgacacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtc |
1683061 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|| | ||||||||||| ||||||| | ||| |||||||| |
|
|
| T |
1683062 |
tttgtcggtaaacgatcaaggaggagtctccaagcaaaaac |
1683102 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 33630019 - 33630143
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||| ||||| |||||| | |||| ||| |||||||| |||||||| ||||| ||||||| ||| ||| |||||||||| |||||||||||| ||| |
|
|
| T |
33630019 |
acacaacaaaaagagatgttgggccgtttccggatgaccgcaaccagcgacacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtc |
33630118 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggagga |
148 |
Q |
| |
|
|| | |||||||||| ||||||| |
|
|
| T |
33630119 |
tttgtcggtaaacgatctcggagga |
33630143 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 13439965 - 13440115
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| | |||| ||| | |||||||||||||| |||||| |
|
|
| T |
13439965 |
caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaacacacgaagacatgtcagacgacaacacccgtcgagcaat |
13440064 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
13440065 |
caaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaac |
13440115 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 45235862 - 45236012
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||| |||||||||||| |||||| || | | ||||||||||||||||||| |||||||| |||||| ||| ||||||| ||||||||| ||||| |
|
|
| T |
45235862 |
caaaagtattacacaataaaaagagatgttgtactgtttcaggatgaccacaaccaacaacacacgaggacatgtcaggcgacatcacccgtcttgcaat |
45235961 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||| || || || ||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
45235962 |
caaatttatctttgttggtaaacgatcacggatgagcctccacgcgaaaac |
45236012 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 45942763 - 45942913
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||| |||||||||||| |||||| | ||||| |||||||||||||||||| |||||||| |||| | ||| ||||||||||||||| ||||||| |
|
|
| T |
45942763 |
caaaagtattacacaataaaaagagatgttgcgccgactcaggatgaccacaaccaacaacacacgaggatatgtcaggcgacaacacccgtttagcaat |
45942862 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|||||| |||||| || |||||||||| | || ||||| |||||| ||||| |
|
|
| T |
45942863 |
caaattagtccttgttggtaaacgatctcagatgagcctccacgcgaaaac |
45942913 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 3104816 - 3104966
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||| |||||||||||| || ||| || ||| ||||||||| || || ||| ||||||||||||||| ||| | || || |||||||||||| || |
|
|
| T |
3104816 |
caaaagtattacacaataaaaagaggtgttgtcccgtttcaggatgtccgcagccaacaacacacaaggacatgtcagccgccagcacccgtctagctat |
3104915 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|||||||||| || || ||||||||||||||| |||| |||| ||||||| |
|
|
| T |
3104916 |
caaatttgtctttgttggtaaacgatcacggatgagcatccacacaaaaac |
3104966 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 15653923 - 15653783
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||| ||||| |||||| | |||| |||||||||||| |||||||| ||||| ||||||| || | || ||||||||||| ||||||||| || ||| |
|
|
| T |
15653923 |
acacaacaaaaagagatgttgagccgtttcaggatgaccgcaaccagcgacacataaggacatatcagtcggcaacacccgtcgagcaatcaagttagtc |
15653824 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|| || |||||||||| |||||||| | |||||||||||| |
|
|
| T |
15653823 |
tttgttggtaaacgatcccggaggagtctccacgcaaaaac |
15653783 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 46623634 - 46623767
Alignment:
| Q |
31 |
aaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtccttctta |
130 |
Q |
| |
|
||||| |||||| | ||||||||||||||||| |||||||| ||||| ||||||| || | || |||||||| || ||||||||| || || | || |
|
|
| T |
46623634 |
aaaaaaagatgttgagccgattcaggatgaccgcaaccagcgacacataaggacatatcagtcggcaacacccttcgagcaatcaagttattcttcgttg |
46623733 |
T |
 |
| Q |
131 |
gtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|||||||||| |||| ||| | |||||||||||| |
|
|
| T |
46623734 |
gtaaacgatcccggatgagtctccacgcaaaaac |
46623767 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 12378943 - 12378803
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||||||||| || ||| | |||| ||||| ||| | ||| |||||||||||| | |||| ||| | || ||||||| |||||||||||| |||| || |
|
|
| T |
12378943 |
acacaataaaaagaggtgttgcgccgtttcagaatgtctacagccagcaacacacgatgacatgtcagtcgtcaacacctgtctagcaatcagatttatc |
12378844 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|| || |||| |||||||||| ||| | |||| ||||||| |
|
|
| T |
12378843 |
tttgttggtaaccgatcacggatgagtctccacacaaaaac |
12378803 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 32918231 - 32918380
Alignment:
| Q |
15 |
aaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatc |
114 |
Q |
| |
|
|||||||| |||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
32918231 |
aaaggtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaacacacaaggacatgtcaggcgacaacacccgtctagcaatc |
32918330 |
T |
 |
| Q |
115 |
aaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||| || || |||||||||| |||| ||||| |||||| ||||| |
|
|
| T |
32918331 |
aaatttgtctttgttggtaaacgatctcggatgagcctccacgcgaaaac |
32918380 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 15499874 - 15499724
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| |||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||| |
|
|
| T |
15499874 |
caaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcaccaacacccgtctagcaat |
15499775 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| || |||||| |||||||| ||||| |||||||||||| |
|
|
| T |
15499774 |
caaatttgtccttgttggtaaacaatcacggatgagcctccacgcaaaaac |
15499724 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 6264426 - 6264276
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| || |||||| ||| ||||||||||||||||||| ||| |
|
|
| T |
6264426 |
caaaagtatcacacaataaaaaaagatgttgtgccgattcgggatgaccacaaccagcaacatacgaggacatgtcaggcgacaacacccgtctagaaat |
6264327 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||||||||| | |||||| |||||| | ||||| ||| || ||||| |
|
|
| T |
6264326 |
caaatttgtccttgtcggtaaacaatcacgaatgagcctccatgcgaaaac |
6264276 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 34480868 - 34481018
Alignment:
| Q |
14 |
caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat |
113 |
Q |
| |
|
|||||||||||||| |||| || || ||| | ||||||||||||| ||||| |||||||||||| | |||| ||| ||||| | ||||||||||| ||| |
|
|
| T |
34480868 |
caaaggtatcacacgataagaaaaggtgttgggccgattcaggataaccacccccagcaacacacgaagacatgtcaggcgatagcacccgtctagaaat |
34480967 |
T |
 |
| Q |
114 |
caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
||||||| |||| | ||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
34480968 |
caaatttaaccttgtcggtaaacggtcacgaaggagcctccacgcaaaaac |
34481018 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 10487138 - 10486998
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc |
123 |
Q |
| |
|
|||||| ||||| |||||| | |||| ||| |||||||| |||||||| ||||| ||||||| ||| ||| |||||||| | |||||||||||| ||| |
|
|
| T |
10487138 |
acacaacaaaaagagatgttgggccgtttccggatgaccgcaaccagcgacacataaggacatgtcattcgataacacccgacgagcaatcaaattagtc |
10487039 |
T |
 |
| Q |
124 |
cttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
|| | |||||||||| ||||||| | ||| |||||||| |
|
|
| T |
10487038 |
tttgtcggtaaacgatcctggaggagtctccaagcaaaaac |
10486998 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0418 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0418
Description:
Target: scaffold0418; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 7598 - 7737
Alignment:
| Q |
25 |
cacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtcc |
124 |
Q |
| |
|
||||| ||||| | |||| | ||||||||||||||||| |||||||| ||||| ||||||| || | || |||||||| || ||||||||| || ||| |
|
|
| T |
7598 |
cacaaaaaaaaaaaatgttgagccgattcaggatgaccgcaaccagcgacacataaggacatatcagtcggcaacacccttcgagcaatcaagttagtct |
7697 |
T |
 |
| Q |
125 |
ttcttagtaaacgatcacggaggagccgccacgcaaaaac |
164 |
Q |
| |
|
| || |||||||||| |||| ||| | |||||||||||| |
|
|
| T |
7698 |
tcgttggtaaacgatctcggatgagtctccacgcaaaaac |
7737 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 134854 - 134793
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggaca |
85 |
Q |
| |
|
|||||||||||| |||||| | |||| ||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
134854 |
acacaataaaaagagatgttgagccgtttccggatgaccacaaccagcgacacataaggaca |
134793 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 312681 - 312620
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggaca |
85 |
Q |
| |
|
|||||||||||| |||||| | |||| ||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
312681 |
acacaataaaaagagatgttgagccgtttccggatgaccacaaccagcgacacataaggaca |
312620 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 328135 - 328074
Alignment:
| Q |
24 |
acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggaca |
85 |
Q |
| |
|
|||||||||||| |||||| | |||| ||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
328135 |
acacaataaaaagagatgttgagccgtttccggatgaccacaaccagcgacacataaggaca |
328074 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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