View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_47 (Length: 321)

Name: NF17080_low_47
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_47
NF17080_low_47
[»] chr2 (10 HSPs)
chr2 (166-306)||(2041205-2041345)
chr2 (14-164)||(43627411-43627561)
chr2 (14-164)||(33547784-33547934)
chr2 (14-164)||(22052539-22052689)
chr2 (25-164)||(31085715-31085854)
chr2 (14-156)||(13550036-13550178)
chr2 (14-164)||(9949342-9949492)
chr2 (19-164)||(26180005-26180149)
chr2 (46-116)||(45421463-45421533)
chr2 (173-205)||(2044655-2044687)
[»] chr8 (6 HSPs)
chr8 (14-164)||(16421088-16421238)
chr8 (14-164)||(2872102-2872252)
chr8 (24-164)||(35405627-35405767)
chr8 (19-102)||(412502-412585)
chr8 (24-119)||(7452274-7452369)
chr8 (14-164)||(19384788-19384938)
[»] chr1 (8 HSPs)
chr1 (14-164)||(3692539-3692689)
chr1 (14-167)||(14119682-14119835)
chr1 (14-164)||(32353375-32353525)
chr1 (14-164)||(48073509-48073659)
chr1 (14-164)||(37530478-37530628)
chr1 (24-164)||(36305706-36305846)
chr1 (24-119)||(36929089-36929184)
chr1 (24-164)||(48265796-48265936)
[»] chr3 (10 HSPs)
chr3 (14-164)||(29309320-29309470)
chr3 (14-164)||(2813578-2813728)
chr3 (19-165)||(6176555-6176701)
chr3 (14-164)||(7146953-7147103)
chr3 (14-165)||(23601685-23601836)
chr3 (29-163)||(14904245-14904379)
chr3 (14-164)||(25873188-25873339)
chr3 (24-164)||(9379019-9379159)
chr3 (55-164)||(49732010-49732119)
chr3 (46-164)||(30167423-30167541)
[»] chr4 (10 HSPs)
chr4 (14-165)||(8487058-8487209)
chr4 (14-164)||(2631310-2631460)
chr4 (14-164)||(20674934-20675084)
chr4 (14-164)||(23873554-23873704)
chr4 (14-164)||(55298532-55298682)
chr4 (24-164)||(3130057-3130197)
chr4 (46-164)||(7663317-7663435)
chr4 (24-164)||(8655151-8655291)
chr4 (24-164)||(23279529-23279669)
chr4 (24-140)||(47540847-47540963)
[»] chr6 (7 HSPs)
chr6 (14-164)||(23347544-23347694)
chr6 (14-164)||(15673737-15673887)
chr6 (14-164)||(25317766-25317916)
chr6 (14-164)||(26205260-26205410)
chr6 (22-164)||(8872904-8873046)
chr6 (24-164)||(1682962-1683102)
chr6 (24-148)||(33630019-33630143)
[»] chr7 (7 HSPs)
chr7 (14-164)||(13439965-13440115)
chr7 (14-164)||(45235862-45236012)
chr7 (14-164)||(45942763-45942913)
chr7 (14-164)||(3104816-3104966)
chr7 (24-164)||(15653783-15653923)
chr7 (31-164)||(46623634-46623767)
chr7 (24-164)||(12378803-12378943)
[»] chr5 (5 HSPs)
chr5 (15-164)||(32918231-32918380)
chr5 (14-164)||(15499724-15499874)
chr5 (14-164)||(6264276-6264426)
chr5 (14-164)||(34480868-34481018)
chr5 (24-164)||(10486998-10487138)
[»] scaffold0418 (1 HSPs)
scaffold0418 (25-164)||(7598-7737)
[»] scaffold0029 (1 HSPs)
scaffold0029 (24-85)||(134793-134854)
[»] scaffold0002 (2 HSPs)
scaffold0002 (24-85)||(312620-312681)
scaffold0002 (24-85)||(328074-328135)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 166 - 306
Target Start/End: Complemental strand, 2041345 - 2041205
Alignment:
166 aatatagagaatattactttccctaactctctcttatgaattctctcaatattttagtttcctagctattacgataccttcagcaatcgctccnnnnnnn 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
2041345 aatatagagaatattactttccctaactctctcttatgaattctctcaatattttagtttcctagctattacgataccttcagcaatcgctccaaaaaaa 2041246  T
266 gttcaaccaccactggagtcccaacgaggagctggaggagg 306  Q
    |||||||||||||||||||||||||||||||||||||||||    
2041245 gttcaaccaccactggagtcccaacgaggagctggaggagg 2041205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 43627411 - 43627561
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| | | |||| ||| |||||||||||||||||||||||    
43627411 caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccacaatcagcaacacgcgaagacatgtcaggcgacaacacccgtctagcaat 43627510  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||| ||||| ||||||||||||    
43627511 caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac 43627561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 33547784 - 33547934
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |||| ||| | |||||||||||||| ||||||    
33547784 caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaacacacaaagacatgtcagacgacaacacccgtcgagcaat 33547883  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| ||  |||||||||||||||||||| ||||||||||||    
33547884 caaatttgtccttgttgataaacgatcacggaggagcctccacgcaaaaac 33547934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 22052539 - 22052689
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||  || |||  |||||||| |||||||||    
22052539 caaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaacacacgaggacatatcaggcaccaacacccttctagcaat 22052638  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||| ||||| |||||| |||||    
22052639 caaatttgtccttgttggtaaacgatcacggatgagcctccacgcgaaaac 22052689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 31085854 - 31085715
Alignment:
25 cacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtcc 124  Q
    ||||||||||| |||||| |||||| ||||||||| || || |||||||||||| |||||| ||| | ||||| |||||||||||||||||||||||||     
31085854 cacaataaaaagagatgttgtgccgtttcaggatgtccgcacccagcaacacacgaggacatgtcagacgacagcacccgtctagcaatcaaatttgtct 31085755  T
125 ttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||| ||||||||||||||| ||||| ||||||||||||    
31085754 ttcttggtaaacgatcacggatgagcctccacgcaaaaac 31085715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 13550036 - 13550178
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||| |||||||||||| |||||| |  |||||||||||||||||||||||| ||||||| |||||| |||  ||||||||||||||||||||||    
13550036 caaaagtattacacaataaaaagagatgttgcaccgattcaggatgaccacaaccagtaacacacgaggacatgtcatgcgacaacacccgtctagcaat 13550135  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccac 156  Q
    |||||| |||||| || |||||||||| |||| ||||| ||||    
13550136 caaattagtccttgttggtaaacgatctcggatgagcctccac 13550178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 9949492 - 9949342
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||||||||||||| |||| || || ||| | |||||||||||||||||||| |||||||||||| | |||| ||| ||||| | ||||||||||| |||    
9949492 caaaggtatcacacgataagaaaaggtgttgggccgattcaggatgaccacacccagcaacacacgaagacatgtcaggcgatagcacccgtctagaaat 9949393  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    |||||||  |||| |  ||||||| ||||| ||||||| ||||||||||||    
9949392 caaatttaaccttgtcggtaaacggtcacgaaggagcctccacgcaaaaac 9949342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 26180149 - 26180005
Alignment:
19 gtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaat 118  Q
    |||| |||||||||||| || ||| ||| || ||||||||| |  || ||||||| ||| ||| | | ||| ||||||| ||||| ||||||||| ||||    
26180149 gtattacacaataaaaagaggtgttgtgtcgtttcaggatgtctgcacccagcaatacaaaagcaaatgtcaggcgacagcaccc-tctagcaattaaat 26180051  T
119 ttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    || || || || |||| |||||||||| ||||  ||||||||||||    
26180050 ttatctttgttggtaaccgatcacggatgagcatccacgcaaaaac 26180005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 45421463 - 45421533
Alignment:
46 gccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaa 116  Q
    ||||||||||||||||| |||||||| ||||| |||||||  || | || |||||||| || |||||||||    
45421463 gccgattcaggatgaccgcaaccagcgacacataaggacatatcagtcggcaacacccttcgagcaatcaa 45421533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 2044687 - 2044655
Alignment:
173 agaatattactttccctaactctctcttatgaa 205  Q
    ||||||||||||||||||||| |||||||||||    
2044687 agaatattactttccctaactttctcttatgaa 2044655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 16421238 - 16421088
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||    
16421238 caaaagtatcacacaacaaaaatagacgtcgtgccgattcaggatgaccacagccagcaacacacgaggacatgtccggcgacaacacccgtctagcaat 16421139  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||    
16421138 caaatttgtccttgttggtaaacgatcacggaggagccgccacgcaaaaac 16421088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 2872102 - 2872252
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||  || |||||||||||||||||||||||    
2872102 caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccacaatcagcaacacacgaagacatatcaggcgacaacacccgtctagcaat 2872201  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||| ||||| ||||||||||||    
2872202 caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac 2872252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 35405627 - 35405767
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||||||||| |||||| |||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||||||    
35405627 acacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtc 35405726  T
124 cttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
     || || ||||||||||||||| ||||| |||||| |||||    
35405727 tttgttggtaaacgatcacggatgagcctccacgcgaaaac 35405767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 412585 - 412502
Alignment:
19 gtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacc 102  Q
    ||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||| ||||||  || | ||||||||||    
412585 gtatcacacaataaatagagatgttgagccgattcaggatgaccacaaccagcaacacacgaggacatatcagacgacaacacc 412502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 7452274 - 7452369
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatt 119  Q
    |||||| | ||| |||||| | |||| |||||||||||| |||||||| ||||| |||||||  || ||| |||||||||||| ||||||||||||    
7452274 acacaacagaaagagatgttgagccgtttcaggatgaccgcaaccagcgacacataaggacatatcaggcaacaacacccgtcgagcaatcaaatt 7452369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 19384938 - 19384788
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||| |||||| || ||||||||| | |||| ||| |||||||| |||||||| ||||| ||||||| |||   ||| |||||||||| ||||||    
19384938 caaaagtattacacaacaagaatagatgttgggccgtttccggatgaccgcaaccagcgacacataaggacatgtcattcgataacacccgtcgagcaat 19384839  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    |||||| ||| |  |  |||||||||| |||| ||| | ||| ||||||||    
19384838 caaattagtcttcgtcggtaaacgatctcggaagagtctccatgcaaaaac 19384788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 3692539 - 3692689
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||    
3692539 caaaagtatcacgcaataaaaatagatgtcgtgccgattcaggatgaccacagccagcaacacacgaggacatgtccggcgacaacacccgtctagcaat 3692638  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||||||    
3692639 caaatttgtccttgttggtaaacgatcacggaggagccgccgcgcaaaaac 3692689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 14119682 - 14119835
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||| |||||||||||| |||||| | |||||||||||||||||||||||| |||||||| |||||| ||| |||||||||||||||||||||||    
14119682 caaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccaacaacacacgaggacatgtcaggcgacaacacccgtctagcaat 14119781  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaacaaa 167  Q
    ||||||||||||| || ||||||||||||||| ||||| |||||| ||||||||    
14119782 caaatttgtccttgttggtaaacgatcacggatgagcctccacgcgaaaacaaa 14119835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 32353525 - 32353375
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||| |||||||||||||||  |||||||||||||||||||  ||||||||| | | |||| ||| |||||||||||||||||||||||    
32353525 caaaagtatcacacattaaaaatagatgtcgatccgattcaggatgaccacattcagcaacactcgaagacatgtcaggcgacaacacccgtctagcaat 32353426  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||| ||||| ||||||||||||    
32353425 caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac 32353375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 48073659 - 48073509
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||  | |||||||||||| | |||| ||| | |||||||||||||| ||||||    
48073659 caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgtagccagcaacacacgaagacatgtcagacgacaacacccgtcgagcaat 48073560  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| ||  |||||||||||||||||||| ||||||||||||    
48073559 caaatttgtccttgttgttaaacgatcacggaggagcctccacgcaaaaac 48073509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 37530478 - 37530628
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| | ||||||||||| |||    
37530478 caaaggtatcacacaataaaaaaaggtgttgtgccgattcaggatgaccacaaccagcaacgcacgaggacatgtcaggcgatagcacccgtctagaaat 37530577  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    |||||| |||||| |   |||||| ||||| ||||||| ||||||||||||    
37530578 caaattcgtccttgtcgataaacggtcacgaaggagcctccacgcaaaaac 37530628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 36305706 - 36305846
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||| ||||| |||||| | |||| |||||||||| | |||||||| ||||| |||||||  || |||||||||||| ||| |||||||||||| |||    
36305706 acacaacaaaaagagatgttgagccgtttcaggatgatcgcaaccagcgacacataaggacatatcaggcgacaacacctgtcgagcaatcaaattagtc 36305805  T
124 cttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
     |  || |||| ||||| | |||||| | ||||||||||||    
36305806 ttcattggtaaccgatccctgaggagtctccacgcaaaaac 36305846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 36929089 - 36929184
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatt 119  Q
    |||||| ||||| |||||| | |||  |||||||||||| |||||||| ||||| |||||||  || ||| ||||||| |||| ||||||||||||    
36929089 acacaacaaaaagagatgttgagccatttcaggatgaccgcaaccagcgacacataaggacatatcaggcaacaacactcgtcgagcaatcaaatt 36929184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 48265936 - 48265796
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||| ||||| |||| | | |||| ||| |||||||| |||| ||| ||||| ||||||| |||   ||| |||||||||| |||||||||||| |||    
48265936 acacaacaaaaaaagatattgggccgtttctggatgaccgcaactagcgacacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtc 48265837  T
124 cttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
     || |  ||||||||||  ||||||| | ||| ||||||||    
48265836 tttgtcggtaaacgatcctggaggagtctccaagcaaaaac 48265796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 29309320 - 29309470
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||    
29309320 caaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacagcacccgtctagcaat 29309419  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||| ||||||||| || ||||||||||||||||||||||||||| ||||||    
29309420 caagtttgtccttgttggtaaacgatcacggaggagccgccacgtaaaaac 29309470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 2813728 - 2813578
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||    
2813728 caaaagtatcgcacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacagcacccgtctagcaat 2813629  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||| ||||| ||||||||||||    
2813628 caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac 2813578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 6176701 - 6176555
Alignment:
19 gtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaat 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||    
6176701 gtatcacacaataaaaatagatggcgtgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacaacacccgtctagcaatcaaat 6176602  T
119 ttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaaca 165  Q
    | |||||| || ||||||||||||||| ||||| ||| |||||||||    
6176601 tagtccttgttggtaaacgatcacggatgagcctccatgcaaaaaca 6176555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 7146953 - 7147103
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |||| ||| |||||||||||||||||||||||    
7146953 caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccacaatcagcaacacacgaagacatgtcaggcgacaacacccgtctagcaat 7147052  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||| ||||| ||||||||||||    
7147053 caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac 7147103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 23601685 - 23601836
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||| | |||| ||| |||||||||||||||||||||||    
23601685 caaaagtatcacacaataaaaatagatgtcgaaccgattcaggatgaccacaaacagcaacacacgaagacatgtcaggcgacaacacccgtctagcaat 23601784  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaaca 165  Q
    ||||||||||||| || ||||||||||||||| ||||| |||||||||||||    
23601785 caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaaca 23601836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 14904379 - 14904245
Alignment:
29 ataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtccttct 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| ||| ||| |||||||||||||||||||||||||||| |    
14904379 ataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacatacgaggacatgtcaggcaacagcacccgtctagcaatcaaatttgtccttgt 14904280  T
129 tagtaaacgatcacggaggagccgccacgcaaaaa 163  Q
    | ||||||||||||||| ||||| | |||||||||    
14904279 tggtaaacgatcacggatgagcctcaacgcaaaaa 14904245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 25873339 - 25873188
Alignment:
14 caaaggtatcacacaataaaaata-gatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaa 112  Q
    |||||||||||||| ||||||| | | ||| |||||||||||||||||||||| |||||||||||| | |||| |||  |||| ||||||||||||| ||    
25873339 caaaggtatcacacgataaaaaaaaggtgttgtgccgattcaggatgaccacacccagcaacacacgaagacatgtcaagcgataacacccgtctagaaa 25873240  T
113 tcaaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    |||||||| ||||| |  ||||||| ||||| ||||||| ||||||||||||    
25873239 tcaaatttatccttgtcggtaaacggtcacgaaggagcctccacgcaaaaac 25873188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 9379019 - 9379159
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||||||||| || ||| |||||| ||||||||||||||||||| ||| ||||||||||| ||  | |||||||||| ||||| |||||||||||||     
9379019 acacaataaaaagaggtgttgtgccgtttcaggatgaccacaaccatcaatacacaaggacatgtaagacgacaacacctgtctaacaatcaaatttgtt 9379118  T
124 cttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
     || || |||||||||||| || ||||| ||||||||||||    
9379119 tttgttggtaaacgatcacagatgagcctccacgcaaaaac 9379159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 49732119 - 49732010
Alignment:
55 ggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtccttcttagtaaacgatcacggaggagccgcc 154  Q
    |||||||| |||||||| ||||| ||||||| |||   ||| |||||||||| |||||||||||| ||| || |  |||||||||| |||||||| | ||    
49732119 ggatgaccgcaaccagcgacacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatcccggaggagtctcc 49732020  T
155 acgcaaaaac 164  Q
    | ||||||||    
49732019 aagcaaaaac 49732010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 30167541 - 30167423
Alignment:
46 gccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtccttcttagtaaacgatcacgga 145  Q
    ||||||||||| ||||| |||||||| ||||| ||||| |  || | || |||||||| || ||||||||| || ||| |  || |||| ||||||||||    
30167541 gccgattcaggctgaccgcaaccagcgacacataaggagatatcagtcggcaacacccttcgagcaatcaagttagtcttcgttggtaatcgatcacgga 30167442  T
146 ggagccgccacgcaaaaac 164  Q
    |||| | ||||||||||||    
30167441 ggagtctccacgcaaaaac 30167423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 8487209 - 8487058
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
8487209 caaaagtatcacacaataaaaatagatggcgtgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacaacacccgtctagcaat 8487110  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaaca 165  Q
    ||||||||||||| || || |||||||||||| ||||| |||||||||||||    
8487109 caaatttgtccttgttggttaacgatcacggatgagcctccacgcaaaaaca 8487058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 2631310 - 2631460
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |||||| ||| |||||||||||||||||||||||    
2631310 caaaagtatcacacaataaaaatagatgtcgtgccgactcaggatgaccacatccaccaacacacgaggacatgtctggcgacaacacccgtctagcaat 2631409  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || |||||||||||||||||||||||||| |||||||    
2631410 caaatttgtccttgttggtaaacgatcacggaggagccgccacacaaaaac 2631460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 20674934 - 20675084
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||| | ||||| |||||||||    
20674934 caaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacgaagacatgtcaggcgaaagcacccatctagcaat 20675033  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||| ||||| ||||||||||||    
20675034 caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac 20675084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 23873704 - 23873554
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| | |||| ||| | |||||||||||||| ||||||    
23873704 caaaagtatcacacaataaaaatagatgacgagccgattcaggatgaccgcaaccagcaacacacgaagacatgtcagacgacaacacccgtcgagcaat 23873605  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||||||||| ||||||||||||    
23873604 caaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaac 23873554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 55298532 - 55298682
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| | |||| ||| | |||||||||||||| ||||||    
55298532 caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaacacacgaagacatgtcagacgacaacacccgtcgagcaat 55298631  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||||||||| ||||||||||||    
55298632 caaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaac 55298682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 3130197 - 3130057
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||| ||||| |||||| | |||| ||| |||||||| |||||||| ||||| || |||| |||   ||| |||||||||| |||||||||||| |||    
3130197 acacaacaaaaagagatgttgggccgtttctggatgaccgcaaccagctacacataaagacatgtcattcgataacacccgtcgagcaatcaaattagtc 3130098  T
124 cttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
     || |  |||||||||| |||||||| | ||| ||||||||    
3130097 tttgtcggtaaacgatctcggaggagtctccaagcaaaaac 3130057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 7663435 - 7663317
Alignment:
46 gccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtccttcttagtaaacgatcacgga 145  Q
    ||||||||||||||||| |||||||| ||||| |||||||  || | || |||||||| || ||||||||| || ||| |  || |||||||||| ||||    
7663435 gccgattcaggatgaccgcaaccagcgacacataaggacatatcagtcggcaacacccttcgagcaatcaagttagtcttcgttggtaaacgatctcgga 7663336  T
146 ggagccgccacgcaaaaac 164  Q
     ||| | ||||||||||||    
7663335 tgagtctccacgcaaaaac 7663317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 8655291 - 8655151
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||| ||||||| |||||| | |||| |||  |||||||||||||||| ||||| ||||||| ||   |||| |||||||| | ||||||||||||  ||    
8655291 acacgataaaaagagatgttgagccgtttccagatgaccacaaccagcgacacataaggacatgtgatgcgataacacccgacgagcaatcaaattaatc 8655192  T
124 cttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
     || || |||| |||||  ||||||| | ||| ||||||||    
8655191 tttgttggtaaccgatcctggaggagtctccaagcaaaaac 8655151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 23279529 - 23279669
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||||||||| |||||| ||| || |||||| ||||| || ||| ||||||| |||||||| ||   ||||| |||||||| | ||| |||||| |||    
23279529 acacaataaaaagagatgttgtgtcgtttcaggttgaccgcagccaacaacacataaggacaaatcattcgacagcacccgtcgatcaaccaaattagtc 23279628  T
124 cttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
     || || |||| ||||| ||||| || | |||| |||||||    
23279629 tttgttggtaatcgatcccggagaagtctccacacaaaaac 23279669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 47540847 - 47540963
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||| || ||||||||| | |||| ||| |||||||| || ||||| ||||| ||||||| |||   ||| |||||||||| |||||||||||| |||    
47540847 acacaacaagaatagatgttgggccgtttccggatgaccgcatccagcgacacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtc 47540946  T
124 cttcttagtaaacgatc 140  Q
     |  | |||||||||||    
47540947 ttcgtcagtaaacgatc 47540963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 23347694 - 23347544
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||   |||||||||||||||    
23347694 caaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgatggcacccgtctagcaat 23347595  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||| ||||| ||||||||||||    
23347594 caaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaac 23347544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 15673737 - 15673887
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||| ||| ||||||||||||| |||||||||    
15673737 caaaagtatcacacaataaaaataaatgtcgtgccgattcaggatgaccacaaccagcaacacaagaggacatgtcaggcgacaacacccttctagcaat 15673836  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || |||||||||| |||| ||||| ||||||||||||    
15673837 caaatttgtccttgttggtaaacgatcccggatgagcctccacgcaaaaac 15673887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 25317766 - 25317916
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
25317766 caaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacaacacccgtctagcaat 25317865  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    |||||| |||||| || |||||||||| |||| ||||| ||||||||||||    
25317866 caaattagtcctttttggtaaacgatctcggatgagcctccacgcaaaaac 25317916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 26205260 - 26205410
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
26205260 caaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcgacaacacccgtctagcaat 26205359  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    |||||| |||||| || |||||||||| |||| ||||| ||||||||||||    
26205360 caaattagtcctttttggtaaacgatctcggatgagcctccacgcaaaaac 26205410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 8873046 - 8872904
Alignment:
22 tcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttg 121  Q
    ||||||||||||||  ||||  |||||||||| |||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||| |||||||||||    
8873046 tcacacaataaaaaaggatgatgtgccgattcgggatgaccacaaccagcaacgcacgaggacatgtcaggcgacaacacccgtctagaaatcaaatttg 8872947  T
122 tccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||| |  ||||||||||||  | ||||| |||||| |||||    
8872946 tccttgtcggtaaacgatcacaaatgagcctccacgcgaaaac 8872904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 1682962 - 1683102
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||| ||||| |||||| | |||| ||| | |||||| |||||||| ||||| ||||||| |||   ||| |||||||||| |||||||||||| |||    
1682962 acacaacaaaaagagatgttgggccgtttccgaatgaccgcaaccagcgacacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtc 1683061  T
124 cttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
     || |  ||||||||||| ||||||| | ||| ||||||||    
1683062 tttgtcggtaaacgatcaaggaggagtctccaagcaaaaac 1683102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 33630019 - 33630143
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||| ||||| |||||| | |||| ||| |||||||| |||||||| ||||| ||||||| |||   ||| |||||||||| |||||||||||| |||    
33630019 acacaacaaaaagagatgttgggccgtttccggatgaccgcaaccagcgacacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtc 33630118  T
124 cttcttagtaaacgatcacggagga 148  Q
     || |  |||||||||| |||||||    
33630119 tttgtcggtaaacgatctcggagga 33630143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 13439965 - 13440115
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| | |||| ||| | |||||||||||||| ||||||    
13439965 caaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaacacacgaagacatgtcagacgacaacacccgtcgagcaat 13440064  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || ||||||||||||||||||||| ||||||||||||    
13440065 caaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaac 13440115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 45235862 - 45236012
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||| |||||||||||| |||||| || | | ||||||||||||||||||| |||||||| |||||| ||| ||||||| ||||||||| |||||    
45235862 caaaagtattacacaataaaaagagatgttgtactgtttcaggatgaccacaaccaacaacacacgaggacatgtcaggcgacatcacccgtcttgcaat 45235961  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||| || || || ||||||||||||||| ||||| |||||| |||||    
45235962 caaatttatctttgttggtaaacgatcacggatgagcctccacgcgaaaac 45236012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 45942763 - 45942913
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||| |||||||||||| |||||| | ||||| |||||||||||||||||| |||||||| |||| | ||| ||||||||||||||| |||||||    
45942763 caaaagtattacacaataaaaagagatgttgcgccgactcaggatgaccacaaccaacaacacacgaggatatgtcaggcgacaacacccgtttagcaat 45942862  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    |||||| |||||| || |||||||||| | || ||||| |||||| |||||    
45942863 caaattagtccttgttggtaaacgatctcagatgagcctccacgcgaaaac 45942913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 3104816 - 3104966
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||| |||||||||||| || ||| || ||| ||||||||| || || ||| ||||||||||||||| ||| | || || |||||||||||| ||    
3104816 caaaagtattacacaataaaaagaggtgttgtcccgtttcaggatgtccgcagccaacaacacacaaggacatgtcagccgccagcacccgtctagctat 3104915  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    |||||||||| || || ||||||||||||||| ||||  |||| |||||||    
3104916 caaatttgtctttgttggtaaacgatcacggatgagcatccacacaaaaac 3104966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 15653923 - 15653783
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||| ||||| |||||| | |||| |||||||||||| |||||||| ||||| |||||||  || | || ||||||||||| ||||||||| || |||    
15653923 acacaacaaaaagagatgttgagccgtttcaggatgaccgcaaccagcgacacataaggacatatcagtcggcaacacccgtcgagcaatcaagttagtc 15653824  T
124 cttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
     || || |||||||||| |||||||| | ||||||||||||    
15653823 tttgttggtaaacgatcccggaggagtctccacgcaaaaac 15653783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 46623634 - 46623767
Alignment:
31 aaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtccttctta 130  Q
    ||||| |||||| | ||||||||||||||||| |||||||| ||||| |||||||  || | || |||||||| || ||||||||| ||  || |  ||     
46623634 aaaaaaagatgttgagccgattcaggatgaccgcaaccagcgacacataaggacatatcagtcggcaacacccttcgagcaatcaagttattcttcgttg 46623733  T
131 gtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    |||||||||| |||| ||| | ||||||||||||    
46623734 gtaaacgatcccggatgagtctccacgcaaaaac 46623767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 12378943 - 12378803
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||||||||| || ||| | |||| ||||| ||| | ||| |||||||||||| | |||| ||| | || ||||||| |||||||||||| |||| ||    
12378943 acacaataaaaagaggtgttgcgccgtttcagaatgtctacagccagcaacacacgatgacatgtcagtcgtcaacacctgtctagcaatcagatttatc 12378844  T
124 cttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
     || || |||| |||||||||| ||| | |||| |||||||    
12378843 tttgttggtaaccgatcacggatgagtctccacacaaaaac 12378803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 32918231 - 32918380
Alignment:
15 aaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatc 114  Q
    |||||||| |||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
32918231 aaaggtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaacacacaaggacatgtcaggcgacaacacccgtctagcaatc 32918330  T
115 aaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||| || || |||||||||| |||| ||||| |||||| |||||    
32918331 aaatttgtctttgttggtaaacgatctcggatgagcctccacgcgaaaac 32918380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 15499874 - 15499724
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| |||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||| |||||| ||| |||  ||||||||||||||||||    
15499874 caaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaacacacgaggacatgtcaggcaccaacacccgtctagcaat 15499775  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| || |||||| |||||||| ||||| ||||||||||||    
15499774 caaatttgtccttgttggtaaacaatcacggatgagcctccacgcaaaaac 15499724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 6264426 - 6264276
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||| ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| || |||||| ||| ||||||||||||||||||| |||    
6264426 caaaagtatcacacaataaaaaaagatgttgtgccgattcgggatgaccacaaccagcaacatacgaggacatgtcaggcgacaacacccgtctagaaat 6264327  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    ||||||||||||| |  |||||| |||||| | ||||| ||| || |||||    
6264326 caaatttgtccttgtcggtaaacaatcacgaatgagcctccatgcgaaaac 6264276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 34480868 - 34481018
Alignment:
14 caaaggtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaat 113  Q
    |||||||||||||| |||| || || ||| | ||||||||||||| |||||  |||||||||||| | |||| ||| ||||| | ||||||||||| |||    
34480868 caaaggtatcacacgataagaaaaggtgttgggccgattcaggataaccacccccagcaacacacgaagacatgtcaggcgatagcacccgtctagaaat 34480967  T
114 caaatttgtccttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    |||||||  |||| |  ||||||| ||||| ||||||| ||||||||||||    
34480968 caaatttaaccttgtcggtaaacggtcacgaaggagcctccacgcaaaaac 34481018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 10487138 - 10486998
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtc 123  Q
    |||||| ||||| |||||| | |||| ||| |||||||| |||||||| ||||| ||||||| |||   ||| |||||||| | |||||||||||| |||    
10487138 acacaacaaaaagagatgttgggccgtttccggatgaccgcaaccagcgacacataaggacatgtcattcgataacacccgacgagcaatcaaattagtc 10487039  T
124 cttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
     || |  ||||||||||  ||||||| | ||| ||||||||    
10487038 tttgtcggtaaacgatcctggaggagtctccaagcaaaaac 10486998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 7598 - 7737
Alignment:
25 cacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggacaagtccggcgacaacacccgtctagcaatcaaatttgtcc 124  Q
    ||||| ||||| | |||| | ||||||||||||||||| |||||||| ||||| |||||||  || | || |||||||| || ||||||||| || |||     
7598 cacaaaaaaaaaaaatgttgagccgattcaggatgaccgcaaccagcgacacataaggacatatcagtcggcaacacccttcgagcaatcaagttagtct 7697  T
125 ttcttagtaaacgatcacggaggagccgccacgcaaaaac 164  Q
    |  || |||||||||| |||| ||| | ||||||||||||    
7698 tcgttggtaaacgatctcggatgagtctccacgcaaaaac 7737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 134854 - 134793
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggaca 85  Q
    |||||||||||| |||||| | |||| ||| ||||||||||||||||| ||||| |||||||    
134854 acacaataaaaagagatgttgagccgtttccggatgaccacaaccagcgacacataaggaca 134793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 312681 - 312620
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggaca 85  Q
    |||||||||||| |||||| | |||| ||| ||||||||||||||||| ||||| |||||||    
312681 acacaataaaaagagatgttgagccgtttccggatgaccacaaccagcgacacataaggaca 312620  T

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Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 328135 - 328074
Alignment:
24 acacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaacacacaaggaca 85  Q
    |||||||||||| |||||| | |||| ||| ||||||||||||||||| ||||| |||||||    
328135 acacaataaaaagagatgttgagccgtttccggatgaccacaaccagcgacacataaggaca 328074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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