View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_48 (Length: 320)
Name: NF17080_low_48
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_48 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 68 - 320
Target Start/End: Complemental strand, 7018807 - 7018553
Alignment:
| Q |
68 |
cgttagatgaaggagatcatgagcttagtcactcatcaccatgtcacacaaggacgttgtgcgaaggagag--cttgggtcttggtctctcatcaccata |
165 |
Q |
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| T |
7018807 |
cgttagatgaaggagatcatgagcttagtcactcatcaccatgtcacacaaggacgttgtgcgaaggagagagcttgggtcttggtctctcatcaccata |
7018708 |
T |
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| Q |
166 |
acggcacaacgacgtcagtcaaagaaaaggttgaaccttggtcgctcatcagcaagttgacacaaggacatagattaaggagagtttaagccttggttgc |
265 |
Q |
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| T |
7018707 |
acggcacaacgacgtcagtcaaagaaaaggttgaaccttggtcgctcatcatcaagttgacacaaggacatagattaaggagagtttaagccttggttgc |
7018608 |
T |
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| Q |
266 |
tcgtcaccacatagacgaaatgacgtcgatcaaaatagagaggtgaacattggta |
320 |
Q |
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| T |
7018607 |
tcgtcaccacataggcgaaatgacgtcgatcaaaatagagaggtgaacattggta |
7018553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 7019093 - 7019044
Alignment:
| Q |
114 |
cacaaggacgttgtgcgaaggagagcttgggtcttggtctctcatcaccat |
164 |
Q |
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| T |
7019093 |
cacaaggacgtggt-cgaaggagagcttgagtcttggtcactcatcaccat |
7019044 |
T |
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