View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17080_low_50 (Length: 301)
Name: NF17080_low_50
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_50 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 7645937 - 7645667
Alignment:
| Q |
12 |
gaaaatcacccaggttataattagttaatttgcttatgatcatacatggacaactagnnnnnnnccttacgtttaaaacattttacaccgtcaatttctt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7645937 |
gaaaatcacccaggttataattagttaatttgcttatgatcatacatggacaactagtttttttccttacgtttaaaacattttacaccgtcattttctt |
7645838 |
T |
|
| Q |
112 |
attacttttgtagaggtcatgatggaaattaattattaagcctaattcagacttgtttgtttttgtgcatgaagattatgacaagacacagggaagcgag |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7645837 |
attacttttgtagaggtcatg---gaaattaattattaagcctaattaagacttgtttgtttttgtgcatgaagattatgacaagacacagggaagcgag |
7645741 |
T |
|
| Q |
212 |
gtgaaagagaaggaaaaagctaggcaccagagcagcgcaaatgcttaggtttttcttgtgtgtagtggtttatg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7645740 |
gtgaaagagaaggaaaaagctaggcaccagagcagcgccaatgcttaggtttttcttgtgtgtagtggtttatg |
7645667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University