View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17080_low_52 (Length: 295)

Name: NF17080_low_52
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17080_low_52
NF17080_low_52
[»] chr5 (2 HSPs)
chr5 (1-279)||(33690348-33690625)
chr5 (11-86)||(27335054-27335129)
[»] chr2 (6 HSPs)
chr2 (11-118)||(4139509-4139617)
chr2 (10-102)||(27060936-27061028)
chr2 (11-99)||(29483277-29483367)
chr2 (39-102)||(38588880-38588943)
chr2 (36-102)||(41231318-41231384)
chr2 (196-264)||(4139655-4139723)
[»] chr4 (2 HSPs)
chr4 (29-83)||(45497628-45497682)
chr4 (27-83)||(26335574-26335630)
[»] chr1 (5 HSPs)
chr1 (27-99)||(4747322-4747394)
chr1 (8-107)||(16136653-16136755)
chr1 (27-99)||(14244648-14244721)
chr1 (27-102)||(5355236-5355312)
chr1 (27-86)||(24763551-24763610)
[»] chr7 (4 HSPs)
chr7 (11-99)||(38364154-38364244)
chr7 (10-99)||(41970662-41970753)
chr7 (27-107)||(22616319-22616400)
chr7 (39-102)||(4092928-4092992)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 33690625 - 33690348
Alignment:
Q  1 ataagagtatgagtaatgataactagacaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgta 100  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  33690625 ataagagtatgagtaatgataattagataaaatatttgatacaaatacaatatcatagacaattttgacatttcaactataaaacaggggtacttttgta 33690526  T
Q  101 aatcccctcatcccatcttgctcacacaaccgtcctccccaccaccaccgccctctcgcaccgtcgtcctcaccatcaccctcaccaccatgagttcgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33690525 aatcccctcatcccatcttgctcacacaaccgtcctccccaccaccaccgccctcccgcaccgtcgtcctcaccatcaccctcaccaccatgagttcgtt 33690426  T
Q  201 cagaactattttccctcacactgcagaagacctgttcagatcaccgctgcaacaccggtgacgacctccttccattcat 279  Q
    |||||||||||||| | |||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  33690425 cagaactattttcctttacaccgcagatgacc-gtttagatcaccgctgcaacaccggtgacgacctccttccattcat 33690348  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 27335129 - 27335054
Alignment:
Q  11 gagtaatgataactagacaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagca 86  Q
    ||||||||||||||| ||| |||||||||||||||||||||| ||  |||| |||||||||||  || ||||||||    
T  27335129 gagtaatgataactaaacacaatatttgacacaaatacaacaccaatgacatttttgacatttgtaccataaagca 27335054  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 4139509 - 4139617
Alignment:
Q  11 gagtaatgataactag-acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgtaaatcccctc 109  Q
    |||||||||||||||| | |||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||      
T  4139509 gagtaatgataactagcataaaatatttgacgcaaatacaacaccatagacatttttgacgtttcaactataaagcaagggtagttttgtaaatccccat 4139608  T
Q  110 atcccatct 118  Q
    |||||||||    
T  4139609 atcccatct 4139617  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 27060936 - 27061028
Alignment:
Q  10 tgagtaatgataactagacaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgtaaa 102  Q
    |||||||||||||||| ||| |||||||||||||||||||||| ||  |||| ||||||||||| ||| |||||||| ||| | |||||||||    
T  27060936 tgagtaatgataactaaacacaatatttgacacaaatacaacaccaatgacatttttgacatttgaaccataaagcaagggcaattttgtaaa 27061028  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 29483277 - 29483367
Alignment:
Q  11 gagtaatgataactagaca--aaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt 99  Q
    |||||||||||||||||||  ||||||||||||||||||| ||| ||| |  | ||| || ||||| || || ||||||||||||||||||    
T  29483277 gagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgt 29483367  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 38588943 - 38588880
Alignment:
Q  39 acacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgtaaa 102  Q
    |||||||||||||||||| ||||||||||| |||||| | ||||||||| || | |||||||||    
T  38588943 acacaaatacaacatcatggacaattttgatatttcacccataaagcagtggcaattttgtaaa 38588880  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 41231384 - 41231318
Alignment:
Q  36 ttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgtaaa 102  Q
    ||||||||||||||||| ||| |||  ||||||||||||||| ||||||  |||| |||||||||||    
T  41231384 ttgacacaaatacaacaccatggactgttttgacatttcaaccataaagtgggggcagttttgtaaa 41231318  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 4139655 - 4139723
Alignment:
Q  196 tcgttcagaactattttccctcacactgcagaagacctgttcagatcaccgctgcaacaccggtgacga 264  Q
    ||||| ||| |||||||||||||||| ||| |||||  ||||| |||||||| ||||||| ||||||||    
T  4139655 tcgttgagatctattttccctcacaccgcaaaagactcgttcatatcaccgccgcaacactggtgacga 4139723  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 45497628 - 45497682
Alignment:
Q  29 aaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaa 83  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| |||||    
T  45497628 aaaatatttgacacaaaaacaacatcatggacaattttgacatttcaaccataaa 45497682  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 26335630 - 26335574
Alignment:
Q  27 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaa 83  Q
    ||||||||||| ||||||| |||||| ||| |||| ||||| ||||||||| |||||    
T  26335630 acaaaatatttaacacaaaaacaacaccatggacagttttgtcatttcaaccataaa 26335574  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 4747394 - 4747322
Alignment:
Q  27 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt 99  Q
    ||||||||||||| |||||||||||  ||| | || ||||||||||||||| |||||||| ||| ||||||||    
T  4747394 acaaaatatttgaaacaaatacaacgccatgggcagttttgacatttcaaccataaagcaagggcagttttgt 4747322  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 16136755 - 16136653
Alignment:
Q  8 tatgagtaatgataactagaca--aaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt-aaatc 104  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||| ||| |  | ||| || ||||| || || ||||||||| |||||||| |||||    
T  16136755 tatgagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggcagttttgtcaaatc 16136656  T
Q  105 ccc 107  Q
    |||    
T  16136655 ccc 16136653  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 14244648 - 14244721
Alignment:
Q  27 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagca-ggggtagttttgt 99  Q
    |||||||||| ||||||||||||||| ||| |||| ||| ||||||||| | |||||||| |||| ||||||||    
T  14244648 acaaaatattggacacaaatacaacaccatggacagtttggacatttcatccataaagcatggggcagttttgt 14244721  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 5355236 - 5355312
Alignment:
Q  27 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagca-ggggtagttttgtaaa 102  Q
    |||||||||||||||||||||||||| ||| || | ||| | ||||| ||| ||||| || ||||||||||||||||    
T  5355236 acaaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaacagggggtagttttgtaaa 5355312  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 24763551 - 24763610
Alignment:
Q  27 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagca 86  Q
    ||||| |||| ||||||||||||||| ||| || |||||||||||||||||  |||||||    
T  24763551 acaaattattagacacaaatacaacaccatggataattttgacatttcaacactaaagca 24763610  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 38364154 - 38364244
Alignment:
Q  11 gagtaatgataactagaca--aaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt 99  Q
    |||||||||||||||||||  ||||||||||||||||||| ||| ||| |  | ||| || ||||| || || ||||||||||||||||||    
T  38364154 gagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgt 38364244  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 41970753 - 41970662
Alignment:
Q  10 tgagtaatgataactagaca--aaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt 99  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||| ||| |  | ||| || ||||| || || ||| ||||||||||||||    
T  41970753 tgagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagtaggggtagttttgt 41970662  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 22616319 - 22616400
Alignment:
Q  27 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt-aaatcccc 107  Q
    |||||||||||||||||||||| ||| ||| |  | ||| || ||||| || || |||||||||||||||||| ||||||||    
T  22616319 acaaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgtcaaatcccc 22616400  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 4092928 - 4092992
Alignment:
Q  39 acacaaatacaacatcatagacaattttgacatttcaactataaagcag-gggtagttttgtaaa 102  Q
    |||||||||||||| ||| | |||||||||||||||||   |||||||| ||||| |||||||||    
T  4092928 acacaaatacaacaccatgggcaattttgacatttcaaaattaaagcagtgggtaattttgtaaa 4092992  T

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