View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_54 (Length: 289)
Name: NF17080_low_54
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 6226781 - 6227061
Alignment:
| Q |
1 |
aagcagcaggcagaagaaggtgaatttacattcatccattcgatatacaagtaacgctatcctccgatcgaagataagaagagcttggaaagatggcagc |
100 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226781 |
aagcagcaggcagaacaagatgaatttacattcatccattcgatatacaagtaacgctatcctccgatcgaagataagaagagcttggaaagatggcagc |
6226880 |
T |
|
| Q |
101 |
aattgagatgaaaacgatgaagtcacggtgtggagacgtcggcactacgatctcctctgttcgcgatccctcatggtggtttgcacatgacagtaaggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226881 |
aattgagatgaaaacgatgaagtcacggtgtggagacgtcggcactacgatctcctctgttcgcgatccctcatggtggtttgcacatgacagtaaggat |
6226980 |
T |
|
| Q |
201 |
ttcgcttttccgttttttctattagttatctccccatataagttttcactattttgcaatcacaattttcatgtcaatcaat |
282 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226981 |
ttcgcttttccgttttttctattagttatct-cccatataagttttcactattttgcaatcacaattttcatgtcaatcaat |
6227061 |
T |
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