View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17080_low_59 (Length: 275)
Name: NF17080_low_59
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_59 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 3278270 - 3278025
Alignment:
| Q |
14 |
atatcatctttgaggatataatcataaatcaaacaaattatcctgtatttattgaccaacattatatgagaaccccagaacaggttagtataattcattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3278270 |
atatcatctttgaggatataatcataaatcaaacaaattatcctgtatttattgaccaacattatatgagaaccccagaacaggttagtataattcattt |
3278171 |
T |
|
| Q |
114 |
ttctcttacttagggttgattaatttttcaaaaatataacatacttacattatttttgttgcagcaccaagcagtgaaaataagtaacatcacattcagc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3278170 |
ttctcttacttagggttgattaatttttcaaaaatataacatacttacattatttttgttgcagcaccaagcagtgaaaataagtaacatcacattcagc |
3278071 |
T |
|
| Q |
214 |
aatatctatggaacatgtattggggaagatgctgttgtgttggatt |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3278070 |
aatatctatggaacatgtattggggaagatgctgttgtgttggatt |
3278025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 3272530 - 3272297
Alignment:
| Q |
14 |
atatcatctttgaggatataatcataaatcaaacaaattatcctgtatttattgaccaacattatatgagaaccccagaacaggttagta-----taatt |
108 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||||| | ||||| |
|
|
| T |
3272530 |
atatcatcttcgaggatataatactatatcaaacaaattaccctgtatatatcgaccaacattatatgaagaccccagaacaggttaacaaaaaataatt |
3272431 |
T |
|
| Q |
109 |
catttttctcttacttagggttgattaatttttcaaaaatataacatacttacattatttttgttgcagcaccaagcagtgaaaataagtaacatcacat |
208 |
Q |
| |
|
|||||||||| || ||| |||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3272430 |
aatttttctctcacgtagtgttgattaatttttgt--------------tttcatt---tttgttgcagcaccaagcagtgaaaataagtaacatcaaat |
3272348 |
T |
|
| Q |
209 |
tcagcaatatctatggaacatgtattggggaagatgctgttgtgttggatt |
259 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||| ||||| |||| ||||||| |
|
|
| T |
3272347 |
tcagtaatatccatggaacatgtattgatgaaaatgctattgtattggatt |
3272297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University