View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_6 (Length: 598)
Name: NF17080_low_6
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 250 - 579
Target Start/End: Original strand, 52262300 - 52262628
Alignment:
| Q |
250 |
caatattatccctagcttgaacagcagcaacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatctt |
349 |
Q |
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| T |
52262300 |
caatattatccctagcttgaacagcagcaacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccag-atccatctt |
52262398 |
T |
|
| Q |
350 |
ctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttctgcaaacaggac |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52262399 |
ctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttttgcaaacaggac |
52262498 |
T |
|
| Q |
450 |
cacctccctttcagccttgcaaatgcatctttagcaatcctctgaatatcctcaaccctctcattaaacgcgtgctgcgtccaagtaagattcttatgtg |
549 |
Q |
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| T |
52262499 |
cacctccctttcagccttgcaaatgcatctttagcaatcctctgaatatcctcaaccttctcattaaacgcgtgctgcgtccaagtaagattcttatgtg |
52262598 |
T |
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| Q |
550 |
cataaggaaccaaaatttcatccattaaag |
579 |
Q |
| |
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| T |
52262599 |
cataaggaaccaaaatttcatccattaaag |
52262628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 181 - 579
Target Start/End: Original strand, 52250584 - 52250986
Alignment:
| Q |
181 |
tgacataacagaaaacataaa----cctatagaaaagtattgccagcacggccacgatgcaacaagtcatgagcaatattatccctagcttgaacagcag |
276 |
Q |
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| T |
52250584 |
tgacataacagaaaacataaaaaaacttataaaaaagtattgccaacacgaccacgatgcaacaaatcatgagcaatattatccctagcttgagcagcag |
52250683 |
T |
|
| Q |
277 |
caacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatccaggatccatcttctcatttctcatctcacaaatattatg |
376 |
Q |
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|||||||| || ||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
52250684 |
caacagatttcacaccattctcagcaaccatttcatcatcaaaaagttcaaaattccatgcaggatccatcttctcattcctcatttcacaaatattatg |
52250783 |
T |
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| Q |
377 |
caaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttctgcaaacaggaccacctccctttcagccttgcaaatgca |
476 |
Q |
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|||||||||||||||||| | || |||||| |||||||| ||||||||| |||||||||||||||| |||||||| ||||||| | ||||||| ||| |
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| T |
52250784 |
caaaacacaacaagcaccaagaacaccaggcaactcctcaatcttcacctctatcctcttctgcaaacaagaccaccttcctttcacctttgcaaacgca |
52250883 |
T |
|
| Q |
477 |
tctttagcaatcctctgaatatcctcaaccctctcattaaacgcgtgctgcgtccaagtaagattcttatgtgcataaggaaccaaaatttcatccatta |
576 |
Q |
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|| ||| | | |||||||||| || || ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| ||||||| | |
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| T |
52250884 |
tccttactcagcttctgaatatcttccactttctcattaaacgcgtgctgtgtccaagtaagattctgatgtgtataaggaaccaaaattccatccatca |
52250983 |
T |
|
| Q |
577 |
aag |
579 |
Q |
| |
|
||| |
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|
| T |
52250984 |
aag |
52250986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 52262179 - 52262277
Alignment:
| Q |
96 |
taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataacagaaa |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52262179 |
taacaatagatccacacaatatagtcttgttcttctctaatatgaatgactagtaataagtcatagctaaaatattgaaatcatttgacataatagaaa |
52262277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 52262121 - 52262173
Alignment:
| Q |
1 |
tcgtgagttcaaatccgcgcccttgtaaactgatgtctccatcaaataaacta |
53 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52262121 |
tcgtgagttcaaatccgcgcccttgtaaacagatgtctccatcaaataaacta |
52262173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 337 - 486
Target Start/End: Complemental strand, 3698992 - 3698843
Alignment:
| Q |
337 |
caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctctt |
436 |
Q |
| |
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|||||||||| |||||| | ||||||||||||| ||||||||||||||||||||||| | | ||||||||| | | ||||| || ||||| || |
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| T |
3698992 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagtcctttt |
3698893 |
T |
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| Q |
437 |
ctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaa |
486 |
Q |
| |
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||||||||| |||||||| ||||||| || ||||||||||||||||||| |
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| T |
3698892 |
ctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaa |
3698843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 337 - 486
Target Start/End: Complemental strand, 3702680 - 3702531
Alignment:
| Q |
337 |
caggatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatc-ttaggcaaatcctcaattttcacctctgtcctct |
435 |
Q |
| |
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|||||||||| |||||| | ||||||||||||| ||||||||||||||||||||| | || || ||||||||| | || ||||| || ||||| | |
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| T |
3702680 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagca-caaagttcaacaggcaaatcttgaagcttcacttcagtccttt |
3702582 |
T |
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| Q |
436 |
tctgcaaacaggaccacctccctttcagccttgcaaatgcatctttagcaa |
486 |
Q |
| |
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|||||||||| |||||||| ||||||| || ||||||||||||||||||| |
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| T |
3702581 |
tctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaa |
3702531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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