View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_65 (Length: 250)
Name: NF17080_low_65
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_65 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 35234561 - 35234627
Alignment:
| Q |
178 |
gtgtataaactatgaatattagctttgtgaaattttaattttaattaaaattacagatataaatatttaatat |
250 |
Q |
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| T |
35234561 |
gtgtatagactatgaatattagctttgtgaaatt------ttaattaaaattacagatataaatatttaatat |
35234627 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 444577 - 444537
Alignment:
| Q |
205 |
tgaaattttaattttaattaaaattacagatataaatattt |
245 |
Q |
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| T |
444577 |
tgaaattttgattttgattaaaattaaagatataaatattt |
444537 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 38321455 - 38321415
Alignment:
| Q |
205 |
tgaaattttaattttaattaaaattacagatataaatattt |
245 |
Q |
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| T |
38321455 |
tgaaattttgatttttattaaaattatagatataaatattt |
38321415 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 4577918 - 4577958
Alignment:
| Q |
205 |
tgaaattttaattttaattaaaattacagatataaatattt |
245 |
Q |
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| T |
4577918 |
tgaaattttaattttgattaaaattatagatatagatattt |
4577958 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 47415879 - 47415919
Alignment:
| Q |
205 |
tgaaattttaattttaattaaaattacagatataaatattt |
245 |
Q |
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| T |
47415879 |
tgaaattttaattttgattaaaattatagatatagatattt |
47415919 |
T |
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