View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_66 (Length: 250)
Name: NF17080_low_66
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 1166181 - 1166324
Alignment:
| Q |
13 |
aacctgtgcaacctagagaaataacgaagactcgagagaagggtgatagggtgaatcctataactaatgaagttatcagttacaaggaatttgctaagtc |
112 |
Q |
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| T |
1166181 |
aacctgtgcaacctagagaaataacgaagactcgagagaagggtgatagggtgaatcctataactaatgaagttatcagttacaaggaatttgctaagtc |
1166280 |
T |
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| Q |
113 |
taggcaaaagtatgtgtatatgcaatatcccttgacaaacttcg |
156 |
Q |
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| T |
1166281 |
taggcaaaagtatgtgtatatgcaatatcccttgacaaacttcg |
1166324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 1166375 - 1166404
Alignment:
| Q |
207 |
tggtacaacaatgtgaagaacccaaataaa |
236 |
Q |
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| T |
1166375 |
tggtacaacaatgtgaagaacccaaataaa |
1166404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 16848278 - 16848416
Alignment:
| Q |
16 |
ctgtgcaacctagagaaataacgaagactcgagagaagggtgatagggtgaatcctataactaatgaagttatcagttacaaggaatttgctaagtctag |
115 |
Q |
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| T |
16848278 |
ctgtgcaacctaaagaaatgatgaagactcgagagaagggtgatagggtgaaccctataactaatgaaatcatcagttataaggaatttgctaagtctag |
16848377 |
T |
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| Q |
116 |
gcaaaagtatgtgtatatgcaatatcccttgacaaactt |
154 |
Q |
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| T |
16848378 |
gcaaaagtatgtgtatatgcaatatcccttaacaaactt |
16848416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 16842666 - 16842717
Alignment:
| Q |
16 |
ctgtgcaacctagagaaataacgaagactcgagagaagggtgatagggtgaat |
68 |
Q |
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| T |
16842666 |
ctgtgcaacctaga-aaatgatgaagactccagagaagggtgatagggtgaat |
16842717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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