View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17080_low_69 (Length: 249)
Name: NF17080_low_69
Description: NF17080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17080_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9277814 - 9278050
Alignment:
| Q |
1 |
ttgaaatttgttagtgcttttccttaacttggttcatttt-ttgctatgcttttatttagtttccgggtacgcattgaatgtcgctatggatccactact |
99 |
Q |
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| T |
9277814 |
ttgaaatttgttagcttttttcccttacttggttcatttttttgctatggttttatttagtttccgggtacgcattgaatgtcgccatggatccactact |
9277913 |
T |
|
| Q |
100 |
catattttacttcaaattaggcatcagaggtgcagccatttcacatgtgctctctcagtaagtctcactttgttttatcctaataataatgttcaaacat |
199 |
Q |
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| T |
9277914 |
catattttacttcaaattaggcatcagaggtgcagccatttcacatgttctttctcagtaagtcttactttgctttatcataataataatgttcaaacat |
9278013 |
T |
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| Q |
200 |
ttttattctcaagacttcaacttacaaaatgatgata |
236 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
9278014 |
ttttattctcaagaattcaacttacaaaatgatgata |
9278050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 13750390 - 13750494
Alignment:
| Q |
58 |
agtttccgggtacgcattgaatgtcgctatggatccactactcatattttacttcaaattaggcatcagaggtgcagccatttcacatgtgctctctcag |
157 |
Q |
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|||||| || ||||||||||||||| |||||||| ||||||| ||||| || ||||| || ||| |||||||||||||||||||| |||| ||| |
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| T |
13750390 |
agtttcgggatacgcattgaatgtcatattggatccaatactcatcttttatttgaaattgggactcaatggtgcagccatttcacatgttttctcccag |
13750489 |
T |
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| Q |
158 |
taagt |
162 |
Q |
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||||| |
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| T |
13750490 |
taagt |
13750494 |
T |
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